| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,816,729 – 24,816,846 |
| Length | 117 |
| Max. P | 0.879244 |
| Location | 24,816,729 – 24,816,846 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.07 |
| Shannon entropy | 0.22578 |
| G+C content | 0.40674 |
| Mean single sequence MFE | -33.53 |
| Consensus MFE | -23.03 |
| Energy contribution | -23.37 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24816729 117 + 27905053 --UGAGUUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCAGCUCGCCCGUUCAUG --...(..((-.(((.(((((..((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))....))))).)))))..)... ( -34.60, z-score = -2.56, R) >droEre2.scaffold_4820 7250032 117 - 10470090 --UGAGUUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCAGCUCGCCCGUUCGUG --...(..((-.(((.(((((..((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))....))))).)))))..)... ( -34.60, z-score = -2.58, R) >droYak2.chr3R 7149625 117 - 28832112 --UGAGUUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCAGCUCGCCCGUUCGUG --...(..((-.(((.(((((..((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))....))))).)))))..)... ( -34.60, z-score = -2.58, R) >droSec1.super_4 3679095 117 + 6179234 --UGAGUUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCAGCUCGCCCGUUCGUG --...(..((-.(((.(((((..((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))....))))).)))))..)... ( -34.60, z-score = -2.58, R) >droSim1.chr3R 24502295 117 + 27517382 --UGAGUUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCAGCUCGCCCGUUCGUG --...(..((-.(((.(((((..((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))....))))).)))))..)... ( -34.60, z-score = -2.58, R) >droVir3.scaffold_13047 18242424 112 + 19223366 ------UGUGUGUGCA-GU-GCUUUUUCAUUCUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGCUCGUUCGUG ------.(.(((.(((-(.-((.((((((...((((((((...))))))))......))))))......(((((((((..((....))..))))))))).)).)))).))).)....... ( -32.50, z-score = -2.80, R) >droGri2.scaffold_15074 1296781 108 - 7742996 ----------UGUGCA-AU-GCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGCUCGUUCGUG ----------.(.(((-..-((.((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..))))))))).))..))).)........... ( -27.80, z-score = -1.58, R) >droMoj3.scaffold_6540 20666125 119 - 34148556 UGUAUAUGUGUUUGCCUGU-GCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGCUCGUUCGUG .....(((.((..((..(.-((.((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..))))))))).)).).))..)).)))..... ( -27.30, z-score = -1.35, R) >droPer1.super_0 7233536 120 + 11822988 UGUGGCUGUGCAGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGGUCGUUCGUG ...(((((.((((..((((((..((((((..(((((((((...))))))))).....))))))..))))(((((((((..((....))..)))))))))))..)))).)))))....... ( -41.20, z-score = -3.82, R) >dp4.chr2 17574418 120 - 30794189 UGUGGCUGUGCAGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGGUCGUUCGUG ...(((((.((((..((((((..((((((..(((((((((...))))))))).....))))))..))))(((((((((..((....))..)))))))))))..)))).)))))....... ( -41.20, z-score = -3.82, R) >droWil1.scaffold_181089 11040492 120 + 12369635 UGUGUGUGUGCAGGCCAGUCGCUUUUUCAUUGUGCAUUUCCCAAAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGGUCGUUCGUG ......((.((((..((......((((((..((((((((.....)))))))).....))))))......(((((((((..((....))..)))))))))))..)))).)).......... ( -30.30, z-score = -1.15, R) >droAna3.scaffold_13340 3945409 104 - 23697760 --UGGGCUUG-AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCGUG------------- --..(((...-..))).((((..((((((..(((((((((...))))))))).....))))))..))))(((((((((..((....))..)))))))))........------------- ( -29.10, z-score = -1.54, R) >consensus __UGAGUUUG_AGGCCAGUUGCUUUUUCAUUGUGCAUUUCCCAGAGGUGCAUUUUUCUGAAAAUCUAAUUUGAGAGAUUGAGAUUGUUUGGUCUUUCAAUGUUCUGCUCGCUCGUUCGUG ....................((.((((((..(((((((((...))))))))).....))))))......(((((((((..((....))..)))))))))......))............. (-23.03 = -23.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:00 2011