| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,791,778 – 24,791,871 |
| Length | 93 |
| Max. P | 0.592764 |
| Location | 24,791,778 – 24,791,871 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 72.13 |
| Shannon entropy | 0.57702 |
| G+C content | 0.40970 |
| Mean single sequence MFE | -21.14 |
| Consensus MFE | -10.63 |
| Energy contribution | -10.56 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24791778 93 + 27905053 AGAAGAUUAUUUUAUUGUAGUGUAGGGGCAGAAUUUCCUGUGGCCAUUUGACGCUUUUGUUGUUUUUGGCCAGCGGUAUUAUAAAUCUUGCCC ..((((((((..((((((....((((((......))))))((((((...(((((....).))))..))))))))))))..)).)))))).... ( -24.70, z-score = -1.50, R) >droWil1.scaffold_181089 11014530 83 + 12369635 AGAAGGUAACGGGACCUCGGGAUCGGGG---------CAAUGGCCAUUUGACGCUUU-GUUGUUUUUAGCUAAAGGCAACAUAAAUCUUGUCU ....(((.....(.(((((....)))))---------)....)))....((((...(-(((((((((....)))))))))).......)))). ( -20.40, z-score = -0.34, R) >droSim1.chr3R 24475428 93 + 27517382 AGAAGAUUAUUUUAUUGUAGUGUAAGUGGAGAAUUUUCUGUGGCCAUUUGACGCCUUUGUUGUUUUUGGCCAGCGGUAUUAUAAAUCUUGCCC ((((((((.(((((((........))))))))))))))).((((((...((((.......))))..))))))..((((..........)))). ( -22.30, z-score = -1.72, R) >droSec1.super_4 3654428 74 + 6179234 AGAAGAUUAUUUUAUU-------------------UUCUGUGGCCAUUUGACGCCUUUGUUGUUUUUGGCCAGUGGUAUUAUAAAUCUUGCCC (((((((......)))-------------------)))).((((((...((((.......))))..))))))..((((..........)))). ( -17.80, z-score = -2.42, R) >droYak2.chr3R 7124076 93 - 28832112 GGAAGAUUAUUUUAUUGUAGUGUAAGGGUAGAAUUUGCUGUGGCCAUUUGACGCCUUUGUUGUUUCUGGCCAGCGGUAUUAUAAAUCUUGCCC ((((((((((((((((.(......).)))))))).(((((((((((...((((.......))))..)))))).))))).....)))))).)). ( -24.50, z-score = -1.38, R) >droEre2.scaffold_4820 7225188 93 - 10470090 AGAAGAUUAUUUUAUUGUAGUGUAAGGGGAGCAGUUUCUGUGGCCAUUUGACGCCUUCGUUGUUUUUGGCCAGCGGUAUUAUAAAUCUUGCCC ..((((((((..((((((......((..(.....)..)).((((((..(((((....)))))....))))))))))))..)).)))))).... ( -21.80, z-score = -0.37, R) >droMoj3.scaffold_6540 20640274 79 - 34148556 -------------AUUGAGGUGGUAGUGGAGCAUUCGCCAUGACCAUUUGCUGUCUU-GUUGUUUUUGGCCACUGGCUACAUAAAUCUUGUCU -------------......((((((((((..((..((.((.(((........))).)-).))....)).))))).)))))............. ( -16.50, z-score = 0.87, R) >consensus AGAAGAUUAUUUUAUUGUAGUGUAAGGGGAGAAUUUUCUGUGGCCAUUUGACGCCUUUGUUGUUUUUGGCCAGCGGUAUUAUAAAUCUUGCCC ........................................((((((...((((.......))))..))))))..((((..........)))). (-10.63 = -10.56 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:54 2011