| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,790,295 – 24,790,415 |
| Length | 120 |
| Max. P | 0.862431 |
| Location | 24,790,295 – 24,790,415 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.98 |
| Shannon entropy | 0.04074 |
| G+C content | 0.34653 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -21.69 |
| Energy contribution | -21.78 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24790295 120 + 27905053 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >droSim1.chr3R 24473937 120 + 27517382 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >droSec1.super_4 3652957 120 + 6179234 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >droYak2.chr3R 7122548 120 - 28832112 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >droEre2.scaffold_4820 7223707 120 - 10470090 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >droAna3.scaffold_13340 3918379 120 - 23697760 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCCGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.67, R) >dp4.chr2 17546504 120 - 30794189 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.72, R) >droPer1.super_0 7205491 120 + 11822988 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.72, R) >droWil1.scaffold_181089 11013477 120 + 12369635 GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAAAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCGAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -23.00, z-score = -1.70, R) >droVir3.scaffold_13047 18216450 120 + 19223366 GUGUAAGUUCCUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAAAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCGAGGCGGACACCAUUCGCAAAGCAAU (((((((((..((((((((((((.....))))......................((((.......))))...))))))))..))))).(((.(....))))))))............... ( -21.60, z-score = -1.08, R) >droMoj3.scaffold_6540 20639214 120 - 34148556 GUGUAAGUUCCUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAAAAUAGAGUAAAGUUAAAUGUUAACUUUCCGGCCGAGCCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((.((((((((.........((((.......))))..........))))))))..))))))))..)))))((((((...)))))).......)))........ ( -24.01, z-score = -2.68, R) >droGri2.scaffold_15074 1269255 120 - 7742996 GUGUAAGUUCCUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAAAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCGAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ ( -21.80, z-score = -1.49, R) >consensus GUGUAAGUUCGUAUUUAACAUGCUUUAUGCAUUCCUCAAUUAUAAAUAGAUUAAAGUCCAGAAUAGACUAAAGUUAAAUGUUAACUUUCCGGCCAAGGCGGACACCAUUCACAAAGCAAU (((.(((((..((((((((((((.....))))......................((((.......))))...))))))))..)))))((((.(....))))).......)))........ (-21.69 = -21.78 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:54 2011