| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,789,319 – 24,789,418 |
| Length | 99 |
| Max. P | 0.644496 |
| Location | 24,789,319 – 24,789,418 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 76.50 |
| Shannon entropy | 0.38082 |
| G+C content | 0.41485 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -11.08 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24789319 99 + 27905053 CAGUAUGUGGGAUUUCUUAAAAGCAAAAACAAAAAAAAAAAAAAGAAGUAUAAGCCGAAGGGCAAAUCCAAUGCACAAAUUGUCUGAGGGGCGGUUGAC ..((((.(((((((((((........................)))))))....(((....)))...))))))))...(((((((.....)))))))... ( -20.46, z-score = -2.01, R) >droSim1.chr3R 24472983 79 + 27517382 CAGUAUGUGGGAUUUCUUGGAAGCAAAAA---------AAA---GAAGGAUAAGCCGAAGGGCAAGUCCAAUGGACAAAUUGUCUGAGGAC-------- .............((((..((........---------...---.........(((....)))..((((...))))......))..)))).-------- ( -18.10, z-score = -1.89, R) >droSec1.super_4 3652008 82 + 6179234 CAGUAUGUGGGAUUUCUUGGAAGCAAAAA---------AAAAAAGAAGGAUAAGCCGAAGGGCAAGUCCAAUGCACAAAUUGUCUGAGGAC-------- ((((.((((.(..(((((...........---------....)))))((((..(((....)))..))))..).)))).)))).........-------- ( -19.86, z-score = -2.44, R) >droYak2.chr3R 7121546 87 - 28832112 CAGCAUGUGGGAUUUCUUGGCAGCCGAAA---------AAA---AAAGGAUAAGCCAAAAGAAAAAUCCAAUAUACAAACUGUCUGAGGGGCGGUUGAC ..(.((((.((((((((((((..((....---------...---...))....))))..)))..))))).)))).).(((((((.....)))))))... ( -21.00, z-score = -1.68, R) >droEre2.scaffold_4820 7222737 86 - 10470090 CAGUAUGUGGGAUUUCCUGUCAGC-AAAA---------AAA---GCAGGAUAACCCGAAAGGCAAAUCCAAUACACAAAAUGUUUGAGGGGCGGUUAAC ..........(((..(((.(((((-....---------...---)).((((...((....))...))))...............))).)))..)))... ( -19.20, z-score = -0.87, R) >consensus CAGUAUGUGGGAUUUCUUGGAAGCAAAAA_________AAA___GAAGGAUAAGCCGAAGGGCAAAUCCAAUGCACAAAUUGUCUGAGGGGCGGUU_AC ((((.((((((....))..............................((((..(((....)))..))))....)))).))))................. (-11.08 = -11.84 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:53 2011