| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,780,226 – 24,780,282 |
| Length | 56 |
| Max. P | 0.851711 |
| Location | 24,780,226 – 24,780,282 |
|---|---|
| Length | 56 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 85.36 |
| Shannon entropy | 0.28048 |
| G+C content | 0.52083 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.57 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24780226 56 + 27905053 GGAGGACGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUC (((((....(((((((...)).)))))....))))).................... ( -19.50, z-score = -1.87, R) >droSim1.chr3R_random 1199401 56 + 1307089 GGAGGACGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUC (((((....(((((((...)).)))))....))))).................... ( -19.50, z-score = -1.87, R) >droSec1.super_4 3642981 56 + 6179234 GGAGGAAGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUC (((((((((.(((.....)))..(((....)))...........)))))))))... ( -21.90, z-score = -2.36, R) >droYak2.chr3R 7111882 56 - 28832112 GGAGGAAAAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUU (((((((((.(((.....)))..(((....)))...........)))))))))... ( -21.80, z-score = -2.63, R) >droEre2.scaffold_4820 7213563 56 - 10470090 GGAGGAAAAAGCCGGCUUGGCACGACUGAAGCCUCCCAUUUUUAUUUUCCUCCUUC (((((((((....((...(((.........)))..)).......)))))))))... ( -16.10, z-score = -1.43, R) >droAna3.scaffold_13340 3908247 56 - 23697760 AGAGGCAGAAGUUGGCAAGAGGCAUCCCUGGCCUCCCCUUUUUAUUUUUCUGCUAU ...((((((((..((...(((((.......))))).))........)))))))).. ( -16.60, z-score = -0.66, R) >consensus GGAGGAAGAAGCCGGCUUGGCACGGCUGAAGCCUCCCAUUUUUAUUUUCCUCCUUC (((((((((.(((.....)))..(((....)))...........)))))))))... (-14.84 = -15.57 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:51 2011