Locus 11954

Sequence ID dm3.chr3R
Location 24,769,296 – 24,769,388
Length 92
Max. P 0.942359
window16425

overview

Window 5

Location 24,769,296 – 24,769,388
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 99.13
Shannon entropy 0.01569
G+C content 0.45652
Mean single sequence MFE -13.80
Consensus MFE -13.80
Energy contribution -13.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.48
SVM RNA-class probability 0.942359
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 24769296 92 + 27905053
UUUAUACACAUUUGCUUUCUUCUCCGAACGGCUUUACCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. ( -13.66, z-score =  -1.78, R)
>droSim1.chr3R 24457563 92 + 27517382
UUUAUACACAUUUGCUUUCUUCUCCGAACGGCUUUACCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. ( -13.66, z-score =  -1.78, R)
>droSec1.super_4 3632192 92 + 6179234
UUUAUACACAUUUGCUUUUUUCUCCGAACGGCUUUACCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. ( -14.36, z-score =  -2.14, R)
>droYak2.chr3R 7100494 92 - 28832112
UUUAUACACAUUUGCUUUCUUCUCCGAACGGCUUUACCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. ( -13.66, z-score =  -1.78, R)
>droEre2.scaffold_4820 7202121 92 - 10470090
UUUAUACACAUUUGCUUUCUUCUCCGAACGGCUUUGCCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. ( -13.66, z-score =  -1.23, R)
>consensus
UUUAUACACAUUUGCUUUCUUCUCCGAACGGCUUUACCCCACCAUUUUCCACCACCCCUUCGGCUUAGAGCUCACUUUUGUUUCGUGUGUUG
...((((((....(((((.....(((((.((........................)).)))))...)))))..((....))...)))))).. (-13.80 = -13.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:48 2011