| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,765,348 – 24,765,470 |
| Length | 122 |
| Max. P | 0.760186 |
| Location | 24,765,348 – 24,765,470 |
|---|---|
| Length | 122 |
| Sequences | 6 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.44745 |
| G+C content | 0.33198 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -15.92 |
| Energy contribution | -15.98 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24765348 122 - 27905053 ACUCCAAUCUAUC--AAAGUCUUAAGUGGCGAAGAAUUUGAUGAUUUCAUUCUUCAACUUUCGCAGCUUAAGAGAAAUAGUUUUGGAAUCAUUUUUUUUUUUUUUUUGUGAUAUUGUGACCAAG ..(((((.((((.--....((((((((.((((((...((((.((......)).)))).)))))).))))))))...))))..)))))(((((...............)))))............ ( -27.36, z-score = -1.79, R) >droEre2.scaffold_4820 7197968 114 + 10470090 ACUCCAAUCUAUC--AAAGUCUUAAGUGGCGAAGAAUUUGAUGAUUUCAUUCCUCAAGUUUUGCAGCUUAAGAGAAAUUGUUUUGGAAUCAU--------UUUUUUGGUGAUAUUCUGACCAAG ..(((((..((..--....((((((((.(((((..((((((.((......)).))))))))))).)))))))).....))..))))).....--------....(((((.(.....).))))). ( -27.70, z-score = -1.62, R) >droYak2.chr3R 7096208 112 + 28832112 ACUCCAAUCUAUC--AAAGUCUUAAGUGGUGAAGAAUUUGAUGAUUUUAUUUUUCAAGUUUCGCAGCUUAAGAGAAAUUGUUUUGGAAUAA----------UUUUUUGCGAUAUUCUGACCAAG .........((((--....((((((((.(((((..((((((.((......)).))))))))))).))))))))(((((((((....)))))----------))))....))))........... ( -23.30, z-score = -1.07, R) >droSec1.super_4 3628152 116 - 6179234 ACUCCAAUCUAUC--AAAGUCUUAAGUGGCGAAGAAUUUGAUGAUUUCAUUCCUCAACUUUCGCAGCUUAAGAGAAAUUGUUUUGGAAUCAAUU------UUUUUUUGUGAUAUUGUGACCAAG ....((...((((--(...((((((((.((((((...((((.((......)).)))).)))))).))))))))(((((((.........)))))------))......)))))...))...... ( -25.80, z-score = -1.44, R) >droSim1.chr3R 24453493 119 - 27517382 ACUCCAAUCUAUC--AAAGUCUUAAGUGGCGAAGAAUUUGAUGAUUUCAUUCCUCAACUUUCGCAGCUUAAGAGAAAUUGUUUUGGAAUCAUUU---CUUUUUUUUUGUGAUAUUGUGACCAAG ....((...((((--(...((((((((.((((((...((((.((......)).)))).)))))).))))))))(((((.(((....))).))))---)..........)))))...))...... ( -25.80, z-score = -1.25, R) >droMoj3.scaffold_6540 20611064 111 + 34148556 AAGCGAAUAUACCCUAUAGAAUUAAGAAGCACUGACUGUAUGGAUUGACAGAUGCGAUAGAUAC-GUACAGCUGUCACUGUUUUUUGACAA------------AUGUCUGACAGUGGAGCUAAG .(((.......((.(((((.....((.....))..))))).))...(((((.((((.......)-)))...)))))((((((....(((..------------..))).))))))...)))... ( -24.70, z-score = -1.01, R) >consensus ACUCCAAUCUAUC__AAAGUCUUAAGUGGCGAAGAAUUUGAUGAUUUCAUUCCUCAACUUUCGCAGCUUAAGAGAAAUUGUUUUGGAAUCAU________UUUUUUUGUGAUAUUGUGACCAAG ..(((((............((((((((.((((((...((((.((......)).)))).)))))).)))))))).........)))))..................................... (-15.92 = -15.98 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:48 2011