| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,759,566 – 24,759,661 |
| Length | 95 |
| Max. P | 0.929838 |
| Location | 24,759,566 – 24,759,661 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 61.08 |
| Shannon entropy | 0.76863 |
| G+C content | 0.55838 |
| Mean single sequence MFE | -29.74 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.45 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24759566 95 + 27905053 CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUACAGCUGAAAAAUCUGGCUAAAGGGUAAAGGCGAUGGGGCAGGCACAGGCACAGGGG----------- (((((((((((.((((...)))).))))))))...((((..(((......(((......))).....)))..)))).)))((....)).......----------- ( -26.60, z-score = -0.61, R) >droSec1.super_4 3622606 95 + 6179234 CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUACAGCUGCAAAAUCUGGCUAAAGGGUGAAGGCGAUGGGGCAGGCACCGGCACAGGCA----------- .((....))..(((........((((((((((((.(((..((((.........))))..)))))).))))))))).((.(....).))....)))----------- ( -29.90, z-score = -0.22, R) >droYak2.chr3R 7090296 95 - 28832112 CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUACAGCAGCAAAAUCUGGCUAAAGGGUGAUGGCACAGCGGGGGGAGUAGGGGCAGUGG----------- .((....))(((((..((.((.(((((((.((((((((..(((((......)).)))...))))).))).))))))).))...))...)))))..----------- ( -29.70, z-score = -0.92, R) >droEre2.scaffold_4820 7192193 77 - 10470090 CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUACAGCUGCAAAAUCUGGCUAAAGGGUGAAGGCACAGGGG----------------------------- (((((((((((.((((...)))).)))))))).(((((..((((.........))))...)))))......)))...----------------------------- ( -25.30, z-score = -2.05, R) >droAna3.scaffold_13340 3887515 102 - 23697760 CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUAGCCGGGUGUA----UCUAGAGGGGUGAGUGGGUUAGACUAUAGGGACUGGGAGUUGUGAGUUGGGGG .......(((((.(.((((((.(((..(((((.(((((..(..((....----))..)..))))).((((......)))).)))))))).)))))))))))).... ( -28.20, z-score = 0.27, R) >dp4.chr2 17510886 80 - 30794189 CUGGGGACAAUUGUGAUAAUUGCCGUUGUCUCGCACCUAGCUCUG--------GGCUGGGGGUGGGCUGCGCGAGGACCUGCCAGUGU------------------ ...((((((((.(..(...)..).))))))))((.((((((....--------.))))))((..((.(.(....).)))..)).))..------------------ ( -32.30, z-score = -1.06, R) >droPer1.super_0 7168916 76 + 11822988 CUGGGGACAAUUGUGAUAAUUGCCGUUGUCUCGCACCUAGCUCUG--------GGCUGGGGGUGGGCUGCGCGAGGACCUGCCA---------------------- ...((((((((.(..(...)..).))))))))...((((((....--------.))))))((..((.(.(....).)))..)).---------------------- ( -32.00, z-score = -1.55, R) >droWil1.scaffold_181089 10980989 101 + 12369635 -CAGGGACAAUUGUGAUAAUUGCCGUUGUCUCACACCUAGGACAUAAAAG---AGCAAAGCAGUGAAGGUGGAGGUGGCUCUGGAGGAGGAGGCGACGGCAGCAA- -..................(((((((((((((.(((((....(((.....---.((......))....))).))))).(((.....))))))))))))))))...- ( -33.90, z-score = -2.78, R) >consensus CUGGGGACAAUUGCGAUAAUUGCCGUUGUCUCACACCUACAGCUGCAAAA___GGCUAAAGGGUGAAGGCGCAGGGGCAUGCGAAGG___AG__G___________ ...((((((((.((((...)))).)))))))).(((((......................)))))......................................... (-12.81 = -13.45 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:47 2011