| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,748,772 – 24,748,823 |
| Length | 51 |
| Max. P | 0.809583 |
| Location | 24,748,772 – 24,748,823 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 82.75 |
| Shannon entropy | 0.32482 |
| G+C content | 0.45098 |
| Mean single sequence MFE | -10.80 |
| Consensus MFE | -9.97 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24748772 51 + 27905053 UGGUCGAUUUUCCUUCUCGGAGUCACGACUGCAAUCGAAACACAAUACUAU .(((((...((((.....))))...)))))..................... ( -9.60, z-score = -1.08, R) >droSim1.chr3R 24409909 51 + 27517382 UGGUCGAUUUUCCUUCUCGGAGUCACGACCGCAAUCGAAUCACACUACUAU .(((((...((((.....))))...)))))..................... ( -12.10, z-score = -1.88, R) >droSec1.super_4 3611994 51 + 6179234 UGGUCGAUUUUCCUUCUCGGAGUCACGACCGCAAUCGAAUCACAAUACUAU .(((((...((((.....))))...)))))..................... ( -12.10, z-score = -1.85, R) >droYak2.chr3R 7079319 51 - 28832112 UGGUCGAUUUUCCUCCUCGGAGUUGCGACUGCAAUCGAAUCACAGUACUAU .(((((...((((.....))))...)))))..................... ( -10.70, z-score = -0.51, R) >droEre2.scaffold_4820 7181517 51 - 10470090 UGGUCGAUUUUCCUCCUCGGAGUCGCGACUGCAAUCGAGACACAAUACUAU .(((((...((((.....))))...)))))..................... ( -10.70, z-score = -0.41, R) >droAna3.scaffold_13340 3873603 51 - 23697760 UGGUUGAUUUUUCUUUUCGGCUUGGCGACUGCAUUAAAGAAAAUGCGCUUU .(((....((((((((...((..(....).))...))))))))...))).. ( -9.60, z-score = -0.26, R) >consensus UGGUCGAUUUUCCUUCUCGGAGUCACGACUGCAAUCGAAACACAAUACUAU .(((((...((((.....))))...)))))..................... ( -9.97 = -9.80 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:46 2011