| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,731,680 – 24,731,791 |
| Length | 111 |
| Max. P | 0.880763 |
| Location | 24,731,680 – 24,731,791 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.64 |
| Shannon entropy | 0.62039 |
| G+C content | 0.68072 |
| Mean single sequence MFE | -54.95 |
| Consensus MFE | -19.43 |
| Energy contribution | -20.14 |
| Covariance contribution | 0.71 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24731680 111 + 27905053 UUAGGGCAGCAGCAGCCGCAGAAGC------GGAGGCCAGAUCUCGAGCACAGGCGGAGGCGGAAGCUCUAGCAAUUGCCCAGGAACAGUUUCGUCAGGCCCGCGAGGCCGAGUCCA--- ...((((((..((..((((....((------.((((.....))))..))....))))((((....)).)).))..)))))).(((...(((((((.......)))))))....))).--- ( -41.40, z-score = -0.35, R) >droYak2.chr3R 7061880 111 - 28832112 UAAGGGCGACAGCAGCCGCGGAAGC------GGAGGCCAGAUCGCGAGCACAGGCGGAGGCGGAAGCUCGGGCAAUUGCCCAGGAACAAUUGCGUCAGGCCCGCGAGGCCGAGUCCA--- ...((((........((((....))------)).((((...(((((.((...(((((((.(....))))((((....))))...........))))..)).)))))))))..)))).--- ( -54.10, z-score = -3.18, R) >droEre2.scaffold_4820 7164297 111 - 10470090 UAAGGGCAACAGCAGCCGCGGAAGC------GGAGGCCAGAUCGCGAUCACAGGCGGAGGCGGAAGCUCGGGCAAUUGCCCAGGAACAAUUGCGUCAGGCCCGCGAGGCCGAGUCCA--- ...((((........((((....))------)).((((...(((((..(...(((((((.(....))))((((....))))...........))))..)..)))))))))..)))).--- ( -50.00, z-score = -2.43, R) >dp4.chr2 16842861 111 - 30794189 UUCGGGCCACAGCCGCCGCCGAGGC------UGUGGCCCAGGCCCGUGCCCAGGCGGAAACAGAGGCACGGGCCAUUGCCGAGGAACAGCUGCGGUUGGCACAUGCGGCCGAAAUCA--- ((((((((((((((........)))------)))))))).((((((((((.....(....)...))))))))))...((((..(..((((....))))...)...)))).)))....--- ( -62.80, z-score = -3.50, R) >droPer1.super_0 6492432 111 + 11822988 UUCGGGCCACAGCCGCUGCCGAGGC------UGUGGCCCAGGCCCGUGCCCAGGCGGAAACAGAGGCACGGGCCAUUGCCGAGGAGCAGCUGCGGUUGGCACAUGCGGCCGAAAUCA--- ((((((((((((((........)))------)))))))).((((((((((.....(....)...))))))))))...((((..(.(((((....))).)).)...)))).)))....--- ( -63.20, z-score = -3.27, R) >droWil1.scaffold_181108 3920929 111 - 4707319 UACGUGCAGCAGCCGCUGCCGAAGC------AGAGGCACAAGCUCGAGCACUAGCCGAAGCACAGGCAAGGGCCAUAGCCGAGGAACAGAUGCGUUUGGCCGCGGCUGCCGAGGCCA--- ...(.((.((((((((.((((((((------(..(((....(((((.((....)))).)))...(((....)))...)))..........))).)))))).))))))))....))).--- ( -47.90, z-score = -1.37, R) >droMoj3.scaffold_6540 8000802 111 - 34148556 UGCGUGCCGCUGCUGCCGCCGAGGC------CGAGGCACGGGCUCGUGCUGAAGCCGAGGCCAAGGCACGAGCUUUGGUUGAGCAGCAGGCGAGCCUGGCCGCUGAGGUGGUGGCUC--- .(((...))).((..(((((..(((------...(((.(((((((((.(((..((...(((((((((....)))))))))..))..))))))))))))))))))..)))))..))..--- ( -63.20, z-score = -2.25, R) >droGri2.scaffold_14830 248568 120 - 6267026 UGCGUGCUGCAGCAGCUGCCGAGGCUGAGGCCGAGGCGCAGGCUCGAAUCCAAGCCGAGGCCAAGGCGCGUGCUCUGGCCGAGGCGCGGGCCCGAGUGACCGCCGAGAUUGAGGCCGCCA .(((.(((((..(((((.....)))))..))(..((((...(((((..(((..(((..(((((..((....))..)))))..)))..)))..)))))...))))..).....)))))).. ( -57.00, z-score = 0.54, R) >consensus UACGGGCAACAGCAGCCGCCGAAGC______GGAGGCCCAAGCUCGAGCACAGGCGGAGGCAGAGGCACGGGCAAUUGCCGAGGAACAGUUGCGUCUGGCCCCCGAGGCCGAGGCCA___ ....((((.(....(((((....)).........(((.....(((((((....((....))....))))))).....))).................)))....).)))).......... (-19.43 = -20.14 + 0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:45 2011