| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,988,266 – 8,988,378 |
| Length | 112 |
| Max. P | 0.984976 |
| Location | 8,988,266 – 8,988,378 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 80.53 |
| Shannon entropy | 0.36635 |
| G+C content | 0.34112 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -16.28 |
| Energy contribution | -16.45 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8988266 112 - 23011544 AAAAAAAAGCGAAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAACACAUUGUA----CACGCAGGCAUUGUUAAUUAAUUCGUAUUUAAUUAGCACAGCUAAACUAAAAGCUGG ........(((..((((.....))))......(((.(..(((......)))..))----)))))......((((((((((.......))))))))))(((((........))))). ( -25.20, z-score = -2.68, R) >droSim1.chr2L 8771763 110 - 22036055 --AAAAAAGCGAAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAACACACUGUA----CACGCAGGCAUUGUUAAUUAAUUCGUAUUUAAUUAGCACAGCUAAACUAAAAGCUGU --......(((..((((.....))))......(((.((((((......)))))))----))))).......(((((((((.......)))))))))((((((........)))))) ( -26.30, z-score = -2.65, R) >droSec1.super_3 4462237 112 - 7220098 AAAAAAAAGCGAAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAACACACUGUA----CACGCAGGCAUUGUUAAUUAAUUCGUAUUUAAUUAGAACAGCUAAACUAAAAGCUGG ....(((.(((((.(((((....(((((...)))))...)))))((((..((((.----...))))....))))......))))).)))........(((((........))))). ( -22.50, z-score = -1.91, R) >droYak2.chr2L 11655054 111 - 22324452 -----AAAGCGAAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAACUCACUACACACGCACGCAGGCAUUGUUAAUUAAUUCGUAUUUAAUUAGCACAGCUAAACUAAAAGCUGC -----...(((..((((.....))))......(((..((((((....)))))).))))))..........((((((((((.......))))))))))(((((........))))). ( -26.50, z-score = -2.40, R) >droEre2.scaffold_4929 9595432 108 - 26641161 ----AAAGGGGCAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAAUAAACUGUA----CACGCAGGCAUUGUUAAUUAGUUCGUAUUUAAUUAGCACAGCUAAACUAAAAGCUGG ----......((..(((((....(((((...)))))...)))))......((((.----...))))))..((((((((((.......))))))))))(((((........))))). ( -25.20, z-score = -2.13, R) >droAna3.scaffold_12943 325960 94 - 5039921 -------------------ACAAAGUUUUUAGUUUUAUGGUGAGAAAAAAAGAGC---ACACGUAUGCAAUGCUAAUUAAUUCGAAUUUAAUUAGCGUGGCCCAACUAAAAGCUAA -------------------....(((((((((((.(((((((............)---)).)))).((.(((((((((((.......))))))))))).))..))))))))))).. ( -26.00, z-score = -3.74, R) >consensus ____AAAAGCGAAGUUCACAGAGAACAUAAAAUGUUAUGGUGAGAACACACUGUA____CACGCAGGCAUUGUUAAUUAAUUCGUAUUUAAUUAGCACAGCUAAACUAAAAGCUGG ..............(((((....(((((...)))))...)))))......((((........))))....((((((((((.......))))))))))(((((........))))). (-16.28 = -16.45 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:23 2011