| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,682,533 – 24,682,615 |
| Length | 82 |
| Max. P | 0.500000 |
| Location | 24,682,533 – 24,682,615 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 85 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Shannon entropy | 0.23083 |
| G+C content | 0.57825 |
| Mean single sequence MFE | -24.56 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.94 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 24682533 82 + 27905053 GCUUGAGCCAUAUACAUUGAUUUUCACGCCAAUUUCUGGCGAGGCACAGGCUAGCACCACCACCACCCGUGGGGACCGAGGA--- (((((.(((........((.....))(((((.....))))).))).))))).....((.((((.....))))))........--- ( -26.80, z-score = -2.29, R) >droEre2.scaffold_4820 7114999 74 - 10470090 GCUUGAGCCAGAUACAUUGAUUUUCACGCCGAUUUCUGGCGAGGCACAGG-----GCCACCACC---CGUGGCGACCGAGGA--- .((((.(((.((...........)).(((((.....))))).))).))))-----(((((....---.))))).........--- ( -23.70, z-score = -1.38, R) >droYak2.chr3R 7009879 77 - 28832112 GCUUGAGCCAGUUACAUUGAUUUUCACGCCAGUUUCUGGCGAGGCACAGG-----GCCACCACC---CGUGGCGAGCUAUAUCGA .((((.(((........((.....))((((((...)))))).))).))))-----(((((....---.)))))((......)).. ( -26.00, z-score = -1.87, R) >droSec1.super_4 3545838 79 + 6179234 GCUGGAUCCAGAUACAUUGAUUUUCACGCCAAUUUCUGGCGAGGCACAGGCCAGCACCACCACC---CGUGGCGACCGAGGA--- (((((..((.((...........)).(((((.....))))).......))))))).......((---((.(....))).)).--- ( -21.50, z-score = -0.44, R) >droSim1.chr3R 24365574 79 + 27517382 GCUGGAGCCAGAUACAUUGAUUUUCACGCCAAUUUCUGGCGAGGCACAGGCCAGCACCACCACC---CGUGGCGACCGAGGA--- (((((.(((.((...........)).(((((.....))))).))).....))))).......((---((.(....))).)).--- ( -24.80, z-score = -1.36, R) >consensus GCUUGAGCCAGAUACAUUGAUUUUCACGCCAAUUUCUGGCGAGGCACAGGC_AGCACCACCACC___CGUGGCGACCGAGGA___ (((((.(((........((.....))(((((.....))))).))).)))))......(.((((.....)))).)........... (-19.10 = -19.94 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:41 2011