| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,638,236 – 24,638,338 |
| Length | 102 |
| Max. P | 0.954349 |
| Location | 24,638,236 – 24,638,338 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 61.13 |
| Shannon entropy | 0.78840 |
| G+C content | 0.45165 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -14.88 |
| Energy contribution | -13.88 |
| Covariance contribution | -1.00 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.49 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954349 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24638236 102 + 27905053 ---------CUUCCAGAUCAUCAGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGUGGGUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCCUGGAGGAGCGAGUGAU ---------(((((((..(((((.....)))))...................(((((((((..((...))..))))))))).............))))))).......... ( -30.50, z-score = -0.82, R) >droSim1.chr3R 24320017 99 + 27517382 ---------CAUCCAGAUCAUCAGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGUGGGUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCC---GGAGACGAGUGAU ---------.(((.....(((((.....))))).....)))...........(((((((((..((...))..)))))))))((.((((.((((..---.)))).)))).)) ( -26.70, z-score = -0.20, R) >droSec1.super_4 3501710 102 + 6179234 ---------CAUCCAGAUCAUCAGCCAAUGAUGUAAACGAUUGCAAUUUCCAGUGUGGGUGUGGCGUUGUUCCAUCCGCACAUGAUUCUUCUCCCUGGAGGAGCGAGUGAU ---------.........(((((.....)))))....((.((((........(((((((((..((...))..))))))))).......(((((....))))))))).)).. ( -29.70, z-score = -0.48, R) >droYak2.chr3R 6964758 102 - 28832112 ---------UAUACAGAUCAUUAGCCCAUGAUGUAAACGAUUGCAAUUUCCAGUGCGGAUGUGGCGUUGUUCCAUCCGCACAUGAUACUUCUCCUCGGAGGAGCGAGUGAU ---------.......((((((.((((....(((((....)))))...(((.(((((((((..((...))..)))))))))..((....)).....))))).)).)))))) ( -33.00, z-score = -2.25, R) >droEre2.scaffold_4820 7070405 102 - 10470090 ---------UAUCCAGAUCAUUAGCCCAUGAUGUAAACGAUUGCAAUUUCCAGUGCGGAUGUGGCGUUGUUCCAUUCGCACAUGAUUCUUCUCCCCGGAGGAGUUAGUGAU ---------.......(((((((((((....(((((....)))))...(((.(((((((((..((...))..)))))))))..((....)).....))))).))))))))) ( -32.20, z-score = -2.50, R) >droAna3.scaffold_13340 17433712 102 + 23697760 --CUUGUGGUUGAUCUGUAAAUAUCCAGUGAUGUAGACUAUUGCAAU-----GUGCGUAUGUGGCGUUGUUCCAUACGCACAUGA--CUCCCCCAUUGGGGGGCAAAUGAU --.(((..((.(.(((....(((((....))))))))).))..)))(-----(((((((((..((...))..))))))))))((.--((((((....))))))))...... ( -34.80, z-score = -2.00, R) >dp4.chr2 27411056 89 - 30794189 -------------CCUCCUGCUACA-AUUGAUGAGAAAAAAUGCAUGUCUUCAUGCGGAUGUGGCGUUGUUCCGUUCGCAUAUGAUGCCCCACAGCACAUGAU-------- -------------.....(((....-................(((((....)))))(((((..((...))..))))))))((((.(((......)))))))..-------- ( -18.50, z-score = 0.93, R) >droPer1.super_7 957647 89 + 4445127 -------------CCUCCUGCUACA-AUUGAUGAGAAAAAAUGCAUGUCUUCAUGCGGAUGUGGCGUUGUUCCGUUCGCAUAUGAUGCCCCACAGCACAUGAU-------- -------------.....(((....-................(((((....)))))(((((..((...))..))))))))((((.(((......)))))))..-------- ( -18.50, z-score = 0.93, R) >droWil1.scaffold_181089 9341086 89 + 12369635 -------CUUUAAGAUUAGUUUGCA-GUUGAUGAAAAAAAACGCAUCUUCC-AUGCGGAUGUGGCGUUGUUCCAUUCGUAUAUGAUG--UUCCA---AAUGAU-------- -------...........(((((..-(((..(....)..)))(((((....-(((((((((..((...))..)))))))))..))))--)..))---)))...-------- ( -18.20, z-score = -0.44, R) >droVir3.scaffold_13047 8966714 96 - 19223366 CAAACAAUUUUCUGUACGGUUUGUA-UUUGAUGAAAAA-CAUGCAUCUUC--AUGCGGAUGUGGCGUUGUUCCAUUCGCAAAUGAUGGUUUCCA---CGUGAU-------- .((((..(((((.((((.....)))-).....))))).-....((((...--.((((((((..((...))..))))))))...))))))))...---......-------- ( -19.80, z-score = 0.78, R) >droMoj3.scaffold_6540 5744526 89 - 34148556 --------CUCUCUUGCGGUUUGCA-UAUGAUGAAAAA-CAUGCAUCUUC--AUGCGGAUGUGGCGUUGUUCCAUUCGUAAAUGAUGGCUUCCA---GGUGAUU------- --------.((.((((.((...((.-((((.(....).-))))((((...--.((((((((..((...))..))))))))...)))))).))))---)).))..------- ( -21.90, z-score = -0.09, R) >droGri2.scaffold_15074 3804041 87 + 7742996 -----------CUUUUUGGUUUGCAAUUUGAUGAAAAAAUACGCAUCUUC--AUGCGGAUGUGGCGUUGUUCCAUUCGCAAAUGAUGGCCUCCA---CAUGAU-------- -----------.....(((...((.((((.......))))...((((...--.((((((((..((...))..))))))))...))))))..)))---......-------- ( -19.40, z-score = 0.27, R) >consensus _________UAUCCAGAUCAUUACACAAUGAUGAAAAAGAAUGCAAUUUCC_AUGCGGAUGUGGCGUUGUUCCAUUCGCACAUGAUGCUUCCCA___GAGGAU________ ....................................................(((((((((..((...))..))))))))).............................. (-14.88 = -13.88 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:35 2011