| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,625,580 – 24,625,671 |
| Length | 91 |
| Max. P | 0.751771 |
| Location | 24,625,580 – 24,625,671 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 64.27 |
| Shannon entropy | 0.68370 |
| G+C content | 0.48141 |
| Mean single sequence MFE | -29.25 |
| Consensus MFE | -10.99 |
| Energy contribution | -11.02 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24625580 91 - 27905053 ----------------CUCGCCUAAAGGCC--AUGAAAUCAAUUUUCGUCAUUAUGCCCCUUGGCCUUGGGUAUUGUGUUAAU----UUGAUUGAUAGUCCU-GGGGUUAAACC ----------------...(((....))).--((((((.....))))))...........(((((((..((.(((((......----.......))))))).-.)))))))... ( -20.72, z-score = -0.13, R) >droSim1.chr3R 24306631 91 - 27517382 ----------------CUCGCCCAAGGGCC--AAGAAAUCAAUUUUCGUCAUUAUGCCACUUGGCCUUGGGCAUUGGGUUAAU----UUGAUUGAUAGUCCU-GGGGUUAAACC ----------------(((((((((((.((--(((........................)))))))))))))...((..((..----........))..)).-)))........ ( -25.76, z-score = -0.51, R) >droSec1.super_4 3489085 107 - 6179234 CACGUCAAAGGCUGACCACGCCCAAGGGCC--AAGAAAUCAAUUUUCGUCAUUAUGCCACUUGGCCUUGGGCAUUGGGUUAAU----UUGAUUGAUAGUCCU-GGGGUUAAACC ((.((((((...(((((..((((((((.((--(((........................)))))))))))))....))))).)----))))))).((..(..-..)..)).... ( -31.96, z-score = -0.81, R) >droYak2.chr3R 6951321 92 + 28832112 ----------------CUUGCCCAAAGGCC--AAGAAAUCAAUUUUCGGCAUUUUGGCACUUGGCCUUGGGCAUUGGGUUAAU----UUGAUUGAUUGUCCUGGGGGUUAAACA ----------------..(((((((.((((--((((((.....)))).((......))..)))))))))))))(..((.((((----(.....))))).))..).......... ( -31.00, z-score = -1.69, R) >droEre2.scaffold_4820 7056997 92 + 10470090 ----------------CUUGCCUAAAGGCC--AAGAAAUCAAUUUUCGGCAUUUUGGCACUUGGCCUUGGGCAUUGGGUUAAU----UUGAUUGAUUGUCCUGGGGGUUAAAUC ----------------..(((((((.((((--((((((.....)))).((......))..)))))))))))))(..((.((((----(.....))))).))..).......... ( -28.70, z-score = -1.67, R) >droAna3.scaffold_13340 17416403 90 - 23697760 ----------------CUUGGCCCCAGGCC--AGCAAAUCAAUUCACGCC-UGGUCCUAGUUGUCCUGGGGCUUUGCUUUAAC----UUGAUUGAUUGUCCU-GGGGUUAAACG ----------------.(((((((((((.(--((..((((((.....((.-.((((((((.....))))))))..))......----))))))..))).)))-))))))))... ( -39.30, z-score = -4.57, R) >dp4.chr2 27396382 87 + 30794189 ----------------CUUGCCCCAAGGCCCUCUCGAAUCAAUUCAGGCAAU--UGCCACACGGCCUUGGGCUCUGGGCUAAU----UUGAUUGAUUGGC-UGUGGGGAA---- ----------------((..((((((((((.....(((....))).(((...--.)))....))))))))).....(((((((----(.....)))))))-))..))...---- ( -34.90, z-score = -2.01, R) >droPer1.super_7 942561 88 - 4445127 ----------------CUUGCCCCAAGGCCCUCUCGAAUCAAAUCAGGCAAU--UGCCACACGGCCUUGGGCUCUGGGCUAAU----UUGAUUGAUUGGCUUGUGGGCAA---- ----------------......((((((((.....((......)).(((...--.)))....))))))))(((((((((((((----(.....)))))))))).))))..---- ( -34.90, z-score = -2.10, R) >droWil1.scaffold_181089 9328589 91 - 12369635 ----------------CUUGCCCAAUGGCC-UCCAAAAUCAAUUCAAGU-----GGCGACUUGGCCUUGGGCAGCAGGUUAAUUUGAUUGAUUGAUUGUUCCUUGUGUUUUUU- ----------------..(((((((.((((-.(((.............)-----))......)))))))))))(((((.(((((.........)))))...))))).......- ( -22.62, z-score = -0.05, R) >droVir3.scaffold_13047 8953534 85 + 19223366 ----------------UUUGCUGCCAGACAGGCUCGAGGCGCUCGGCAAGGCUAAUAAGCCCUGACCCAGGACACGAACCAAU----UUGAUUGAUUGCCUGGUG--------- ----------------......(((.....))).(.(((((.((((((.((((....)))).)).))..((.......))...----......)).))))).)..--------- ( -22.60, z-score = 0.29, R) >consensus ________________CUUGCCCAAAGGCC__AAGAAAUCAAUUUUCGUCAUUAUGCCACUUGGCCUUGGGCAUUGGGUUAAU____UUGAUUGAUUGUCCUGGGGGUUAAAC_ ...................((((.((((((................................)))))))))).......................................... (-10.99 = -11.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:34 2011