| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,975,288 – 8,975,383 |
| Length | 95 |
| Max. P | 0.901868 |
| Location | 8,975,288 – 8,975,383 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.94 |
| Shannon entropy | 0.16094 |
| G+C content | 0.52744 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -23.37 |
| Energy contribution | -23.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8975288 95 + 23011544 AUUAGCCGCGAACUCGACCGAUUUGUGUACCGAUUUUCGAUUUCCGAGUGCGC--UACACGGUGCCACAGUUCAGCAGUUCAGCGGUUCAGCGGUUG ..((((((((((((.....((.(((((((((.....(((.....)))(((...--..))))))).))))).)).((......))))))).))))))) ( -31.00, z-score = -1.70, R) >droSim1.chr2L 8758914 90 + 22036055 AUUAGCCGCGAACUCGCCCGAUUUGGGUACCGAUUUUCGAUUUCCGAGUGCUAGCUACACGGUGCCACAGUUCAGCAGUUCAACGGUUCA------- ...(((((.(((((.((..((.((((((((((....(((.....)))(((.....))).))))))).))).)).)))))))..)))))..------- ( -29.40, z-score = -2.40, R) >droSec1.super_3 4449524 86 + 7220098 AUUAGCCGCGAACUCGCCCGAUUUGGGUACCGAUAUUCGAUUUCCGAGUGCUA----CACGGUGCCACAGUUCAGCAGUUCAACGGUUCA------- ...(((((.(((((.((..((.((((((((((.((((((.....))))))...----..))))))).))).)).)))))))..)))))..------- ( -30.50, z-score = -3.19, R) >consensus AUUAGCCGCGAACUCGCCCGAUUUGGGUACCGAUUUUCGAUUUCCGAGUGCUA__UACACGGUGCCACAGUUCAGCAGUUCAACGGUUCA_______ ...(((((.(((((.(.(.((.(((((((((.....(((.....)))(((.......))))))))).))).)).)))))))..)))))......... (-23.37 = -23.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:22 2011