| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,610,327 – 24,610,420 |
| Length | 93 |
| Max. P | 0.712271 |
| Location | 24,610,327 – 24,610,420 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.37 |
| Shannon entropy | 0.46846 |
| G+C content | 0.54295 |
| Mean single sequence MFE | -34.21 |
| Consensus MFE | -17.31 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24610327 93 + 27905053 -------------------CCAACAACAU--UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAAGGGCGCUGCAAACUGUUUCCGUUCGACGGCCGG----- -------------------..........--..(((((((((((((((.(((((.((.((((....((.......))....)))))).))))).))))))))...).)))))).----- ( -34.80, z-score = -1.87, R) >droSim1.chr3R 24296212 93 + 27517382 -------------------CCAACAACAU--UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAAGGGCGCUGCAAACUGUUUCCGUUCCACGGCCGG----- -------------------..........--..((((((.((((((((.(((((.((.((((....((.......))....)))))).))))).)))))))).....)))))).----- ( -34.40, z-score = -1.82, R) >droSec1.super_4 3479015 93 + 6179234 -------------------CCAACAACAU--UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAAGGGAGCUGCAAACUGUUUCCGUUCCACGGCCGG----- -------------------..........--..((((((.(((((((((((.(((.(((((.(((.......))).)))..)).)))...)))).))))))).....)))))).----- ( -30.90, z-score = -1.03, R) >droYak2.chr3R 6940777 93 - 28832112 -------------------CCAACAACAU--UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAAGGGCGCUGCAAACUGUUUCCGUUCCACGGCCGG----- -------------------..........--..((((((.((((((((.(((((.((.((((....((.......))....)))))).))))).)))))))).....)))))).----- ( -34.40, z-score = -1.82, R) >droEre2.scaffold_4820 7046599 93 - 10470090 -------------------CCAACAACAU--UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAAGGGCGCUGCAAACUGUUUCCGUUCCACGGCCGG----- -------------------..........--..((((((.((((((((.(((((.((.((((....((.......))....)))))).))))).)))))))).....)))))).----- ( -34.40, z-score = -1.82, R) >droAna3.scaffold_13340 17406324 114 + 23697760 CCAAAAACACCAAGCUCUGCCAGUGCUGACAUUUGGCUGCCGGAAGCGUUUUACUUCAGCUCCAAACUAAUAUUGAGGCAGGCACGCUGCGAACUGUUUCCGUUUGAUGCCCAG----- .......((.(((((...(((((((....)).)))))....((((((((((.......((..(((.......)))..))..((.....)))))).))))))))))).)).....----- ( -26.30, z-score = 1.08, R) >dp4.chr2 27386531 96 - 30794189 ------------------UCCAACAACAGCAUUUGGCUGCCGGAAGCGUUUUGCAGCCGCCCCAAACUAAUAUUGAGGCAGGCGCGCAGCAAACUGUUUCCGUUCAAGGGAUGG----- ------------------(((.....((((.....)))).((((((((.(((((.((((((.(((.......))).))).))).....))))).))))))))......)))...----- ( -33.40, z-score = -1.33, R) >droPer1.super_7 932689 96 + 4445127 ------------------UCCAACAACAGCAUUUGGCUGCCGGAAGCGUUUUGCAGCCGCCCCAAACUAAUAUUGAGGCAGGCGCGCAGCAAACUGUUUCCGUUCAAGGGAUGG----- ------------------(((.....((((.....)))).((((((((.(((((.((((((.(((.......))).))).))).....))))).))))))))......)))...----- ( -33.40, z-score = -1.33, R) >droWil1.scaffold_181089 3050569 94 - 12369635 ---------UCAACAA-AAGCAAUGUU---------UUGCCGGAAGCGUUUUGUAGCCGC-CCAAACUAAUAUUGAGGCAGGCGCGCAGCAAACUGUUUCCGCCAGGCGGCAGA----- ---------.......-..((((....---------)))).(((((((.(((((.(((((-(....((.......))...)))).)).))))).)))))))(((....)))...----- ( -31.40, z-score = -0.95, R) >droVir3.scaffold_13047 8943001 108 - 19223366 ---------UCAACAACAGGCAACGUUGCCAUUUGGCUGCCGGAAGCGUUUUGCUGCCGU-CCAAACUAAUAUUGAGACAG-CGCGCAGCAAACUGUUUCCGGCAGGCGUCAACAGCAG ---------.........((((....))))....(.((((((((((((.(((((((((((-((((.......))).)))..-.).)))))))).)))))))))))).)........... ( -44.60, z-score = -3.67, R) >droGri2.scaffold_14624 4208041 108 - 4233967 ---------UCAACAACCGGCAACGUUGCCAUUUCGCUGCCGGAAGCGUUUUGCUACCGC-CCAAACUAAUAUUGAGACAG-CGUGCAGCAAACUGUUUCCGGCAGGCGUCACCAUCAG ---------.........((((....))))....((((((((((((((.((((((.((((-...................)-)).).)))))).))))))))))).))).......... ( -38.31, z-score = -3.21, R) >consensus ___________________CCAACAACAU__UUUGGCUGCCGGAAGCGUUUUGCUGCCGCCCCAAACUAAUAUUGAGGCAGGCGCGCUGCAAACUGUUUCCGUUCGACGGCCGG_____ ........................................((((((((.(((((.((.((......((.......))......)))).))))).))))))))................. (-17.31 = -17.45 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:30 2011