| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,573,607 – 24,573,704 |
| Length | 97 |
| Max. P | 0.904116 |
| Location | 24,573,607 – 24,573,704 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 94.02 |
| Shannon entropy | 0.10445 |
| G+C content | 0.45773 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -23.20 |
| Energy contribution | -23.88 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24573607 97 + 27905053 GCCCAGUUUCCAGUUUGCAGUUCCCAGUUGCGUUCAUUCGAUGAUGGAGCAGCUUUUCGAAAGCAUCCAGCUUUUAAAAGGCAAUACAAAUUUGGCG (((.(((((..........(((((..((((........))))...))))).((((((..(((((.....)))))..)))))).....))))).))). ( -27.70, z-score = -2.38, R) >droEre2.scaffold_4820 7020949 97 - 10470090 GCCCAGUUACCAGUUUUCCGUUCCCAGUUGGGUUCAUUCGAUGUUGGAGCAGCUUUUCGAAAGCAUCCAGCUCUCAAAAGGCAAUACAAAUUUGCCG ...................(..(((....)))..)....((.((((((...((((.....)))).))))))))......(((((.......))))). ( -24.00, z-score = -1.66, R) >droYak2.chr3R 6916696 97 - 28832112 GCCCAGUUACCAGUUUUCAGUUCCCAGUUGGGUUCAUUCGAUGAUGGAGCAGCUUUUCGAAAGCAUCCAGCUCUCAAAAGGCAAUACAAAUUUGCCG .........................((((((((.(.(((((....((.....))..))))).).)))))))).......(((((.......))))). ( -20.90, z-score = -0.45, R) >droSec1.super_4 3455472 97 + 6179234 GCCCAGUUACCAGUUUGUAGUUCCCAGUUGGGUUCAUGCGAUGAUGGAUCAGCUUUUCGAAAGCAUCCAGCUUUCAAAAGGUAAUACAAAUUUGGCG (((.((((.(((..((((((..(((....)))..).)))))...)))....((((((.((((((.....)))))).))))))......)))).))). ( -31.00, z-score = -3.44, R) >droSim1.chr3R_random 1177066 97 + 1307089 GCCCAGUUACCAAUUUGCAGUUCCCAGUUGGGUUCAUUCGAUGAUGGAGCAGCUUUUCGAAAGCAUCCAGCUUUCAAAAGGCAAUACAAAUUUGGCG (((.((((...........(((((..((((((....))))))...))))).((((((.((((((.....)))))).))))))......)))).))). ( -30.00, z-score = -2.83, R) >consensus GCCCAGUUACCAGUUUGCAGUUCCCAGUUGGGUUCAUUCGAUGAUGGAGCAGCUUUUCGAAAGCAUCCAGCUUUCAAAAGGCAAUACAAAUUUGGCG (((.((((...........(((((..((((........))))...))))).((((((.((((((.....)))))).))))))......)))).))). (-23.20 = -23.88 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:27 2011