| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,571,446 – 24,571,557 |
| Length | 111 |
| Max. P | 0.828490 |
| Location | 24,571,446 – 24,571,557 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.04 |
| Shannon entropy | 0.40945 |
| G+C content | 0.66341 |
| Mean single sequence MFE | -48.80 |
| Consensus MFE | -39.73 |
| Energy contribution | -39.46 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24571446 111 + 27905053 CUGUGGCCCCCAUCAAACCUGCGGCGGGCUGUCCCGUCGCCUGGCAUUUCUGGCUGAUGUGAGUGUAGGUGGGGUUGGGAGGUGGGGUGUGAGGUGUGGGGCUAUGGCUCA ((((((((((((((..((((((((((((....))))))))....((((((((.((.((.((....)).)).)).)..)))))))))))....)))).)))))))))).... ( -47.80, z-score = -0.68, R) >droSim1.chr3R 24270586 108 + 27517382 CUGUGGCCCCCAUCAAACCUGCGGCGGGCCGUCCCGUCGCCUGGCAUUUCUGGCUGAUGUGAGUGUAGGUGGGU---GGGGUUGGGAGGUGGGGUGUGGGGCUACGGCUCA ((((((((((((((..((((((((((((....))))))))(..((....((.(((.((......)).))).)).---...))..).))))..)))).)))))))))).... ( -54.30, z-score = -1.90, R) >droSec1.super_4 3453054 108 + 6179234 CUGUGGCCCCCAUCAAACCUGCGGCGGGCCGUCCCGUCGCCUGGCAUUUCUGGCUGAUGUGAGUGUAGGUGGGU---GGGGUUGGGAGGAGGGGUGGGGGGCUAUGGCUCA (((((((((((..((..(((.(((((((....)))))).((..((....((.(((.((......)).))).)).---...))..)).).)))..))))))))))))).... ( -49.50, z-score = -0.52, R) >droYak2.chr3R 6914520 96 - 28832112 CUGUGGCCCCCAUCAAACCUGCGGCGGGCUGUCCUGUCGCCCGAUGUG----------AUGUACAUAGGUGGG-----GAUGUGGGGUCUAGGGUGUGGGGUCAUGGCUCA ((((((((((((((...((..(((((((....)))))).((((.((((----------.....))))..))))-----...)..))......)))).)))))))))).... ( -42.50, z-score = -0.97, R) >droEre2.scaffold_4820 7018691 89 - 10470090 CUGUGGCCCCCAUCAAACCUGCGGCGGGCUCUCCUGUCGCCCGCCACC------------------GGGCGGG----GGGUGUAGGGUGUGGGUUGUGGGGCCAUGGCUCA ((((((((((.....((((..((.(..((.(((((..((((((....)------------------)))))))----))).))..).))..))))..)))))))))).... ( -49.90, z-score = -1.39, R) >consensus CUGUGGCCCCCAUCAAACCUGCGGCGGGCUGUCCCGUCGCCUGGCAUUUCUGGCUGAUGUGAGUGUAGGUGGG____GGGGGUGGGGUGUGGGGUGUGGGGCUAUGGCUCA ((((((((((((((...(((((((((((....))))))((((.((((((...........))))))))))...........)))))......)))).)))))))))).... (-39.73 = -39.46 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:26 2011