| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,567,643 – 24,567,737 |
| Length | 94 |
| Max. P | 0.873548 |
| Location | 24,567,643 – 24,567,737 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 83.42 |
| Shannon entropy | 0.31826 |
| G+C content | 0.30040 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24567643 94 + 27905053 ---GCUGGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCCUGUUCC--------------- ---...((((...((((...((...((((((((((....)))))))))).----((((((.....))))))...........))...)))).)))).....--------------- ( -20.90, z-score = -2.31, R) >droSim1.chr3R 24266785 94 + 27517382 ---GCUGGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCCUGCUUC--------------- ---((.((((...((((...((...((((((((((....)))))))))).----((((((.....))))))...........))...)))).))))))...--------------- ( -22.70, z-score = -3.01, R) >droSec1.super_4 3449273 94 + 6179234 ---GCUGGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUGAAUUAUGCCUUUUUAUCGCCUGUUUC--------------- ---...((((...((((...((...((((((((((....)))))))))).----((((((.....))))))...........))...)))).)))).....--------------- ( -20.90, z-score = -2.20, R) >droYak2.chr3R 6910666 94 - 28832112 ---GCUGGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCCUGUUUC--------------- ---...((((...((((...((...((((((((((....)))))))))).----((((((.....))))))...........))...)))).)))).....--------------- ( -20.90, z-score = -2.37, R) >droEre2.scaffold_4820 7014842 94 - 10470090 ---GCUGGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCCUCUUUC--------------- ---...((((...((((...((...((((((((((....)))))))))).----((((((.....))))))...........))...)))).)))).....--------------- ( -20.30, z-score = -2.60, R) >droAna3.scaffold_13340 17375542 99 + 23697760 UGUGCCAGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCGUAUGUUUC------------- .(((..(((((..............((((((((((....)))))))))).----((((((.....)))))).........)))))......))).........------------- ( -20.30, z-score = -1.30, R) >dp4.chr2 27353969 95 - 30794189 ---ACCAACAAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGGAGGCCUUC-------------- ---..........(((((..((...((((((((((....)))))))))).----((((((.....)))))).))..)))))((((((.....))))))....-------------- ( -20.00, z-score = -2.69, R) >droPer1.super_7 900051 95 + 4445127 ---ACCAACAAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA----CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGGAGGCCUUC-------------- ---..........(((((..((...((((((((((....)))))))))).----((((((.....)))))).))..)))))((((((.....))))))....-------------- ( -20.00, z-score = -2.69, R) >droWil1.scaffold_181089 9283219 114 + 12369635 --UAGGAACAAUUGUAAUAUGAAAAUAAUUAAUAGGAAACUCUUAAUUAAGUAAUAUGUUGAUCAAACAUGAGUUAAUUAUGUCAUUUUGUCGUACGUUUCUUUUGUAUUCCCUGU --((((.((((..((.((((((...(((((((.((....)).))))))).....((((((.....))))))......)))))).)).)))).(((((.......)))))..)))). ( -19.50, z-score = -1.05, R) >droVir3.scaffold_13047 8896150 92 - 19223366 ------ACUGUAUGUAAUAUGAAUAUAAUUAAUAGCUAACUGUUAAUUGA----CAUGUUGAUCAAACAUGAGUUAAUUAUGCCGUUUUAUCGCACGUUUUG-------------- ------((.(((((((((.......((((((((((....)))))))))).----((((((.....)))))).))))..))))).))................-------------- ( -15.20, z-score = -0.12, R) >consensus ___GCUAGGCAAUGUAAUAUGGAAAUAAUUAAUAGCAAACUGUUAAUUAA____CAUGUUGAUCAAACAUGACUUAAUUAUGCCUUUUUAUCGCCUGUUUC_______________ .............((((...((...((((((((((....)))))))))).....((((((.....))))))...........))...))))......................... (-13.51 = -13.28 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:25 2011