| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,561,706 – 24,561,764 |
| Length | 58 |
| Max. P | 0.954911 |
| Location | 24,561,706 – 24,561,764 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 96.55 |
| Shannon entropy | 0.04750 |
| G+C content | 0.45977 |
| Mean single sequence MFE | -13.70 |
| Consensus MFE | -14.11 |
| Energy contribution | -13.67 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.51 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24561706 58 + 27905053 UUCUGCUCAGCUUUGGCGUUAUUGUUUGGCUAUUUGCUCGGUGGGGAAACGAAUUAUC ..(..((.(((..((((...........))))...))).))..)(....)........ ( -13.10, z-score = -0.96, R) >droSim1.chr3R 24260744 58 + 27517382 UUCUACUCGGCUUUGGCGUUAUUGUUUGGCUAUUUGCUCGGUGGGGAAACGACUUAUC ..(((((.(((..((((...........))))...))).)))))(....)........ ( -14.00, z-score = -1.78, R) >droSec1.super_4 3443286 58 + 6179234 UUCUACUCGGCUUUGGCGUUAUUGUUUGGCUAUUUGCUCGGUGGGGAAACGACUUAUC ..(((((.(((..((((...........))))...))).)))))(....)........ ( -14.00, z-score = -1.78, R) >consensus UUCUACUCGGCUUUGGCGUUAUUGUUUGGCUAUUUGCUCGGUGGGGAAACGACUUAUC ..(((((.(((..((((...........))))...))).)))))(....)........ (-14.11 = -13.67 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:24 2011