| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,940,834 – 8,940,933 |
| Length | 99 |
| Max. P | 0.835488 |
| Location | 8,940,834 – 8,940,933 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 87.07 |
| Shannon entropy | 0.23544 |
| G+C content | 0.39980 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -16.10 |
| Energy contribution | -17.62 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8940834 99 + 23011544 UCUAUUGUUUAAUCUGGGCAAUUAAAAGAGCCCCACUUAUCAGUGUCUCCCCUGAAUAAUCAAAAAUGGAGCGGUACGCUGAUAAGAAAUCAAUGGAAG ((((((((((.....((((..........))))..(((((((((((((((..(((....))).....))))....)))))))))))))).))))))).. ( -30.10, z-score = -3.97, R) >droSim1.chr2L 8720608 99 + 22036055 UUUUUUGUUUAAUCUGGGCAAUUAAACCAGCCCCACUUAUCAGUGUCUCUCCUGAAUAAUCAAAAGUGGAGCGGUACGCUGAUAAGAAAUCAAUCGAAC ......((((.....((((..........))))..(((((((((((((((((...............)))).)).))))))))))).........)))) ( -27.06, z-score = -3.21, R) >droSec1.super_3 4415244 99 + 7220098 UUUUUUGUUUAAUCUGGGCAAUUAAACCAGCCCCACUUAUCAGUGUCUCCCCUGAAUAAUCAAAAGUGGAGCGGUACGCUGAUAAGAAAUCAAUCGAAC ......((((.....((((..........))))..(((((((((((((((.((...........)).))))....))))))))))).........)))) ( -25.90, z-score = -2.77, R) >droYak2.chr2L 11590703 99 + 22324452 AUUUUUGUUUAAUCUGAGCAAUUAUACCAGCCACACCUAUCAGUCUCUCCCCUUAAUAAUCAAAAGUGGAGCGAUACGGCGAUAAGAAAUCAAUCGAAA ((..((((((.....))))))..))....(((..........(((.((((.(((.........))).)))).)))..)))(((.....)))........ ( -13.60, z-score = 0.11, R) >droEre2.scaffold_4929 9537589 90 + 26641161 ---------UAAUCUGAACAAUUAUACCAGCCCCACUUAUCAGUGCCUCCCCUGAAUAAUCAAAAGUGGAGCGGUGGGCUGAUAAGAAAUCAAUCGAAC ---------.....(((....((((..((((((((((....))))(((((.((...........)).)))).)..))))))))))....)))....... ( -19.50, z-score = -1.30, R) >consensus UUUUUUGUUUAAUCUGGGCAAUUAAACCAGCCCCACUUAUCAGUGUCUCCCCUGAAUAAUCAAAAGUGGAGCGGUACGCUGAUAAGAAAUCAAUCGAAC ...............((((..........))))..(((((((((((((((.((...........)).))))....)))))))))))............. (-16.10 = -17.62 + 1.52)
| Location | 8,940,834 – 8,940,933 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 87.07 |
| Shannon entropy | 0.23544 |
| G+C content | 0.39980 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -20.02 |
| Energy contribution | -19.82 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8940834 99 - 23011544 CUUCCAUUGAUUUCUUAUCAGCGUACCGCUCCAUUUUUGAUUAUUCAGGGGAGACACUGAUAAGUGGGGCUCUUUUAAUUGCCCAGAUUAAACAAUAGA ......(((((((((((((((.((....((((....((((....)))).)))))).))))))))..((((..........)))))))))))........ ( -26.00, z-score = -2.09, R) >droSim1.chr2L 8720608 99 - 22036055 GUUCGAUUGAUUUCUUAUCAGCGUACCGCUCCACUUUUGAUUAUUCAGGAGAGACACUGAUAAGUGGGGCUGGUUUAAUUGCCCAGAUUAAACAAAAAA (((..(((.....((((((((.((....((((.....(((....)))))))..)).))))))))..((((..........)))).)))..)))...... ( -27.90, z-score = -2.64, R) >droSec1.super_3 4415244 99 - 7220098 GUUCGAUUGAUUUCUUAUCAGCGUACCGCUCCACUUUUGAUUAUUCAGGGGAGACACUGAUAAGUGGGGCUGGUUUAAUUGCCCAGAUUAAACAAAAAA ((.((.(((((.....))))))).)).(((((((((........((((.(....).)))).)))))))))..((((((((.....))))))))...... ( -29.60, z-score = -2.78, R) >droYak2.chr2L 11590703 99 - 22324452 UUUCGAUUGAUUUCUUAUCGCCGUAUCGCUCCACUUUUGAUUAUUAAGGGGAGAGACUGAUAGGUGUGGCUGGUAUAAUUGCUCAGAUUAAACAAAAAU ....((..((((...((((((((((((.((((.((((........)))))))).........)))))))).)))).))))..))............... ( -19.40, z-score = 0.20, R) >droEre2.scaffold_4929 9537589 90 - 26641161 GUUCGAUUGAUUUCUUAUCAGCCCACCGCUCCACUUUUGAUUAUUCAGGGGAGGCACUGAUAAGUGGGGCUGGUAUAAUUGUUCAGAUUA--------- ....((..((((...(((((((((....((((.((..(((....))))))))).((((....))))))))))))).))))..))......--------- ( -29.40, z-score = -2.65, R) >consensus GUUCGAUUGAUUUCUUAUCAGCGUACCGCUCCACUUUUGAUUAUUCAGGGGAGACACUGAUAAGUGGGGCUGGUUUAAUUGCCCAGAUUAAACAAAAAA ......(((((((((((((((.((....((((...............))))..)).))))))))..((((..........)))))))))))........ (-20.02 = -19.82 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:21 2011