| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,555,014 – 24,555,110 |
| Length | 96 |
| Max. P | 0.800671 |
| Location | 24,555,014 – 24,555,110 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.93 |
| Shannon entropy | 0.41911 |
| G+C content | 0.50494 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -21.03 |
| Energy contribution | -23.43 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24555014 96 - 27905053 AAUAAAGGACAUUGGGCGCGUAAGGGGAGUGAAGUUCACUUUGCCAGAGUGUCCUG-CCGCCUAAUGCCGCCCUGUGACGGGAUGCUUCCCUUUAAA- .........(((.((((((((.(((((.....((..(((((.....)))))..)).-)).))).))).))))).)))..((((....))))......- ( -34.30, z-score = -1.65, R) >droAna3.scaffold_13340 17361416 77 - 23697760 AAUAAAGGAUUUUGAGC--------GGCGUAGAGCACACUCGACCAAAGUGUCCU----------UUUCAGUCCUUUUCAUG-UGAGUCUCUUUAA-- ..((((((((((.(((.--------(((..((((.(((((.......))))).))----------))...))))))......-.))))).))))).-- ( -17.20, z-score = -0.82, R) >droEre2.scaffold_4820 7001979 96 + 10470090 AAUAAAGGACAUGUGGCGUGUAAAGGGAGUUAAGUUCAUUUGGCCGGAGUGUCCUG-CCGCCUAAUGCCACCCUCUGUCAGGAUGUUUCCCUUUAAA- ..(((((((((.(((((((....((((((.....)))....(((.((.....)).)-)).))).)))))))....)))).(((....))))))))..- ( -29.20, z-score = -1.50, R) >droYak2.chr3R 6897810 97 + 28832112 AAUAAAGGACAUGGGGCGUGUAAGGGGAGUAAAGUUCAUUUGGCCGGAGUGUCCUG-CCGCCUAAUGCCGCCCUCUGUCAGGAUGUUUCCCUUUUAAA ...((((((((.((((((.(((..(((...(((.....)))(((.((.....)).)-)).)))..))))))))).)))).(((....))))))).... ( -33.00, z-score = -1.29, R) >droSec1.super_4 3436598 96 - 6179234 AAUAAAGGACAUUGGGCGCGUAAGGGGAGUGAAGUUCACUUGGCCAGAGUGCCCUG-CCGCCUAAUGCCGCCCUCUGUCGGGAUGCUUCCCUUUAAA- .......((((..((((((((.(((.(((((.....)))))(((.((......)))-)).))).))).)))))..))))((((....))))......- ( -38.60, z-score = -2.13, R) >droSim1.chr3R 24253753 97 - 27517382 AAUAAAGGACAUUGGGCGCGUAAGGGGAGUGAAGUUCACUUGGCCAGAGUGCCCAGCCCGCCUAAUGCCGCCCUCUGUUGGGAUGCUUCCCUUUAAA- .......((((..((((((((.(((((.((...(..(((((.....)))))..).)))).))).))).)))))..))))((((....))))......- ( -34.90, z-score = -0.97, R) >consensus AAUAAAGGACAUUGGGCGCGUAAGGGGAGUGAAGUUCACUUGGCCAGAGUGUCCUG_CCGCCUAAUGCCGCCCUCUGUCAGGAUGCUUCCCUUUAAA_ ..(((((((((..(((((.(((..(((.....((..(((((.....)))))..)).....)))..))))))))..)))).(((....))))))))... (-21.03 = -23.43 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:22 2011