| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,550,672 – 24,550,772 |
| Length | 100 |
| Max. P | 0.556192 |
| Location | 24,550,672 – 24,550,772 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 58.28 |
| Shannon entropy | 0.86392 |
| G+C content | 0.41585 |
| Mean single sequence MFE | -25.07 |
| Consensus MFE | -8.00 |
| Energy contribution | -7.35 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24550672 100 - 27905053 AAGACAUUGCAC---GCAUCCACCAGCAAUUGCACCUUGUGCAGUUUCUUCAGGCUGAA-----AUAUAUG-----ACAUAUAUAUAAAUU-CGAU-AGUGAUGGAUGUGUGGGA ......((.(((---(((((((.((((((((((((...)))))))).......))))..-----(((((((-----...))))))).....-....-.....)))))))))).)) ( -29.11, z-score = -1.91, R) >droGri2.scaffold_14624 4163804 103 + 4233967 AAUACGUUGCAU---GUAUCGACAAGCAGUUGUACUUUGUGCAGUUUUUUUAAGCUAU------AAAUGGAAA---AUUCGAGAAAUAAAACUUAACGAAAAUGUAUCUAUAAAA .(((((((((((---(((.((((.....)))))))...)))).(((((((.((.(((.------...)))...---.)).))))))).............)))))))........ ( -13.80, z-score = 0.89, R) >droMoj3.scaffold_6540 5666503 107 + 34148556 AAUACGUUGCACGUCGCAUCCACCAGCAGCUGCACCUUGUGCAGUUUCUUCAAGCUGUG-----AAUUGAGCA---AUGCAAUGAAACACAUUUUCAACUGUCAGAGGCAUGGGA ....(((((((.....((..(((.(((((((((((...)))))))).......))))))-----...))....---.)))))))........(..((..(((.....)))))..) ( -25.11, z-score = 1.30, R) >droVir3.scaffold_13047 8876980 106 + 19223366 AAGACGUUGCACGUGGCAUCAACAAGCAGCUGCACCUUGUGUAGUUUCUUCAGGCUGUC-----AAAUGAAAA---AUGCGAUAAAGAAAA-UGGAAAUUGACGAACUCAUGGGA ..(.((((.((..(((((.(...(((.((((((((...)))))))).)))...).))))-----)..))...)---))))((....(..((-(....)))..)....))...... ( -20.20, z-score = 1.42, R) >droPer1.super_7 881643 90 - 4445127 AAGACGUUGCAU---GCGUCCACCAGGAGCUGCACUUUGUGCAGUUUCUUCAGGCUGCG-----AAAGGC------AUUUAAAUAAAUUGA-AGGAUGCGUGUGG---------- ......(..(((---((((((...(((((((((((...)))))))))))....(((...-----...)))------...............-.)))))))))..)---------- ( -34.40, z-score = -3.11, R) >dp4.chr2 27335616 90 + 30794189 AAGACGUUGCAU---GCGUCCACCAGGAGCUGCACUUUGUGCAGUUUCUUCAGGCUGCG-----AAAGGC------AUUUAAAUAAAUUGA-GGGAUGCGUGUGG---------- ......(..(((---((((((..((((((((((((...)))))))))).....(((...-----...)))------............)).-.)))))))))..)---------- ( -35.50, z-score = -3.29, R) >droAna3.scaffold_13340 17356430 111 - 23697760 AAGACAUUGCAC---CCGUCCACCAGUAGCUGCACCUUGUGCAGUUUCUUUAGGCUGAAAAUGCAUUUAAAAUGGCACGUACAUAUACAAU-GUGUAACUGAGUGAUGUGUGGGA ......((.(((---.((((.((((((.(((.......(((((.((((........)))).))))).......)))...(((((((...))-))))))))).)))))).))).)) ( -28.54, z-score = 0.08, R) >droEre2.scaffold_4820 6997614 101 + 10470090 AAGACAUUGCAC---GCAUCCACCAACAACUGCACCUUGUGCAGUUUCUUCAGGCUGAA-----AUAUACAAU---ACGUAUGCAU-UAUU-CCAU-AUUGAUGGAUGUGUGGGA ......((.(((---(((((((.(((.((((((((...))))))))......((.(((.-----.(((((...---..)))))..)-))..-))..-.))).)))))))))).)) ( -31.60, z-score = -2.74, R) >droYak2.chr3R 6893416 101 + 28832112 AAGACAUUGCAC---GCCUCCACCAGCAACUGCACCUUGUGCAGUUUCUUCAAACUGAA-----AUAUGUAU----ACAUAUAUUUAUAUU-CAAU-AGUGAUGGAUGUGUGGGA ......((.(((---((.((((..((.((((((((...)))))))).))(((...((((-----(((.((((----....)))).))).))-))..-..))))))).))))).)) ( -26.60, z-score = -1.72, R) >anoGam1.chr2R 43854891 82 - 62725911 AACACGUUGCACA--GCG-GAAUGUACAGCUGUACGUUGUGGAGCUUUUUGAGUCUACAA----AAAUGAAGCAAGAUCAAGUCAUUAU-------------------------- .....(((.((((--(((-....(.....)....))))))).))).(((((..((.....----....))..)))))............-------------------------- ( -17.30, z-score = 0.11, R) >droWil1.scaffold_181089 9264626 78 - 12369635 AAGAUAUUGUAU---GCGUCGACCAACAGCUGCACUUUAUGCAGUUUCUUCAAACUGCA-----AAAUAC------ACACACACACACAAA-C---------------------- .......(((((---(((.(........).)))......((((((((....))))))))-----..))))------)..............-.---------------------- ( -13.60, z-score = -1.33, R) >consensus AAGACGUUGCAC___GCAUCCACCAGCAGCUGCACCUUGUGCAGUUUCUUCAGGCUGAA_____AAAUGAA_____AUGUAAAUAAAAAAA_CGAA_ACUGAUGGAUGU_UGGGA .......(((.....))).........((((((((...))))))))..................................................................... ( -8.00 = -7.35 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:20 2011