| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,544,766 – 24,544,860 |
| Length | 94 |
| Max. P | 0.720979 |
| Location | 24,544,766 – 24,544,860 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 71.10 |
| Shannon entropy | 0.60529 |
| G+C content | 0.48674 |
| Mean single sequence MFE | -21.56 |
| Consensus MFE | -12.09 |
| Energy contribution | -11.25 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.55 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720979 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24544766 94 - 27905053 UAACAUCGAUUUUUGUCUUAGUUC---ACUUACCGCACUUGCACGACAAACUUCGCGUAGCAACGCCCUCUGCAAGUUGGUCUUCAGCGGCAGCUGG .......(((....))).......---....((((.(((((((.((......))((((....))))....)))))))))))...((((....)))). ( -21.80, z-score = -0.23, R) >droSim1.chr3R 24243223 94 - 27517382 UACCAUCGAUUUUUGUCUUAAUUC---ACUUACCGCACUUGCACGACAAACUUCGCGUAGCAACGCCCGCUGCAAGUUUUUCUUCAGCGGCAGCUGG ..(((.(((..((((((.(((...---..)))..((....))..))))))..))((((....))))((((((.(((.....)))))))))..).))) ( -24.30, z-score = -2.04, R) >droSec1.super_4 3426385 94 - 6179234 UACCAUCGAUUUUUGUCUUAAUUC---ACUUACCGCACUUGCACGACAAACUUCGCGUAGCAACGCCCGCUGCAAGUUUUUCUUCAGCGGCAGCUGG ..(((.(((..((((((.(((...---..)))..((....))..))))))..))((((....))))((((((.(((.....)))))))))..).))) ( -24.30, z-score = -2.04, R) >droYak2.chr3R 6887372 94 + 28832112 UUAUAUUGAUAUUUGUUUAAGUUC---ACUUACCACACUUGCACGACAAACUUCGCGUAGCAAAGCCCGCUGCAAGUUCCUCUUCAGCGGCAGCUGG .................((((...---.))))((....(((((((.(.......)))).))))(((((((((.(((.....)))))))))..))))) ( -20.60, z-score = -0.64, R) >droEre2.scaffold_4820 6991668 94 + 10470090 UUACUUUGAUUUUUGUUUUAGUUC---ACUUACCACACUUGCAUGACAAACUUCGCGUAGCAACGCCCGUUGCAAGUUUCUUUUCAGCGGCAGCUGG ..(((..(((....)))..)))..---.........(((((((.((......))((((....))))....))))))).......((((....)))). ( -17.80, z-score = 0.12, R) >droAna3.scaffold_13340 17350643 78 - 23697760 ----------------UUCAGUGU---ACUUACCAUGUUUGGGCGACAAACUUCUCUCAGUAAUUCCCGCUGCAGGUUUCGUCUGACCGACAGUUGG ----------------.......(---(((......(((((.....))))).......))))...((.((((..((((......))))..)))).)) ( -17.32, z-score = -0.04, R) >droPer1.super_7 875933 97 - 4445127 UACUAUCCACCCCCGCCACUGCCCCAUACUUACCACAUUUGCACGACAAACUUCGCGCAGCACGGCACGCUGCAGGUUCCAUUUCAGUGGCAGAUGG ..............(((((((..........(((.........(((......))).(((((.......))))).))).......)))))))...... ( -24.53, z-score = -1.50, R) >droWil1.scaffold_181089 9259805 92 - 12369635 ----AUACAUGGUAGGAGAUAUUAC-UACUUACCCCAUUUGCUUGGCAAACCUCAUGCAGCAGGGCACGCUUAAGGGUCCAUUUCAGUGGCAUUUGG ----......((((((((......)-).))))))(((..((((..(((.......)))....((((.(......).))))........))))..))) ( -21.80, z-score = 0.42, R) >consensus UAACAUCGAUUUUUGUCUUAGUUC___ACUUACCACACUUGCACGACAAACUUCGCGUAGCAACGCCCGCUGCAAGUUUCUCUUCAGCGGCAGCUGG ................................(((...((((.(((......))).))))....((.(((((.(((.....))))))))))...))) (-12.09 = -11.25 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:14 2011