| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,533,326 – 24,533,431 |
| Length | 105 |
| Max. P | 0.938350 |
| Location | 24,533,326 – 24,533,431 |
|---|---|
| Length | 105 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 67.47 |
| Shannon entropy | 0.63074 |
| G+C content | 0.51883 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.39 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.938350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24533326 105 + 27905053 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCGCA-----UCCGUU--GCCAUCUUACUUU-CUCCCAUCCUUCCAUUCCCAUCACCACACCAUCCCACGAUUC ..(((((((((..((((...((((((....))).))))))))))-----..))))--))...........-.......................................... ( -21.00, z-score = -1.93, R) >droSim1.chr3R 24231618 105 + 27517382 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCGCA-----UCCGUU--GCCAUCUUACUUU-CUCCCAUCUUUCCGUUCCCAUCACCGCACCAUUCCACGAUUC (((.(((((((..((((...((((((....))).)))))))(((-----.....)--))...........-.........................))).))))...)))... ( -22.20, z-score = -1.47, R) >droSec1.super_4 3415025 105 + 6179234 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCGCA-----UCCGUU--GCCAUCUUACUUU-CACCCAUCUUUCCGUUCCCAUCACCGCACCAUUCCACGAUUC (((.(((((((..((((...((((((....))).)))))))(((-----.....)--))...........-.........................))).))))...)))... ( -22.20, z-score = -1.42, R) >droYak2.chr3R 6875551 105 - 28832112 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCGCA-----UCCGUU--GCCAUCUUACUUU-CUCCCAUCUUUUCAUUCCCAUCACCGCACCAUUCCACUAUUC ..(.(((((((..((((...((((((....))).)))))))(((-----.....)--))...........-.........................))).)))).)....... ( -21.60, z-score = -2.03, R) >droEre2.scaffold_4820 6980185 105 - 10470090 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCGCA-----UCCGUU--GCCAUCUUACUUU-CUCCCAUCUUUCCAUUCCCAUCACCGCACCAUCCCACUAUCC .......((((..((((...((((((....))).)))))))(((-----.....)--))...........-.........................))))............. ( -21.20, z-score = -2.04, R) >droAna3.scaffold_13340 17339420 83 + 23697760 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCAU-------CCGUU--GCCAUCUCAGUUUGCUGCCUGCUUUCCAUACCCCU--------------------- ..((((((.((((((((...((((((....))).)))..))))-------...))--)))))..(((....)))..))).............--------------------- ( -21.60, z-score = -0.54, R) >dp4.chr2 27317592 94 - 30794189 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCAUAGUGUAUCCGUUUCGCCAUCUCACUUU-CUACUUUCUACUCGUACGAGUCGC------------------ ..((...(((((.((((...((((((....))).)))..))))..)))))....................-.........((((....)))).))------------------ ( -20.40, z-score = 0.07, R) >droPer1.super_7 863673 94 + 4445127 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCAUAGUGUAUCCGUUUCGCCAUCUCACUUU-CUACUUUCUACUCGUACGAGUCGC------------------ ..((...(((((.((((...((((((....))).)))..))))..)))))....................-.........((((....)))).))------------------ ( -20.40, z-score = 0.07, R) >droVir3.scaffold_13047 8855128 79 - 19223366 UCGCAAUGUGCAAGUGCAAAUGCCCCUAAGGGUAGCAGCGCAU-------CCGCU--GCCAAAGCC---ACCAAAGCCAC--ACACACAAACA-------------------- ......((((...((((...(((((....)))))((((((...-------.))))--)).......---......).)))--...))))....-------------------- ( -21.80, z-score = -1.32, R) >droMoj3.scaffold_6540 5645472 88 - 34148556 UAGCAAUGUGCAAGUGCAAAUGCCCCUAAGGCUAACAGCGCAU-------CCGUU--GCCAAAGCCCG-ACCACACAUAC--AUAUACAGACAUACAUGA------------- ..((((((.(...((((....(((.....))).....))))..-------)))))--)).........-...........--..................------------- ( -14.60, z-score = 0.47, R) >droGri2.scaffold_14624 4134626 95 - 4233967 UCACAAUAUGCAAGUGCAAAUGCCCCAAAGGGGAACAGCGCAU-------CCGUU--GCCAGUCCCAACUUCAAACUCACCCACACACAGACACUCACACAAUC--------- ........((..(((((.....((((...))))..(((((...-------.))))--)...............................).))))..)).....--------- ( -13.40, z-score = 0.22, R) >consensus UCGCAAUGUGCAAGUGCAAAUGCCCCUAAAGGGAGCAGCGCAUA_____UCCGUU__GCCAUCUCACUUU_CUCCCAUCUUUCCAUACCCAUCACC_CAC_AU__________ ..((.....))..((((...((((((....))).)))..))))...................................................................... (-12.34 = -12.39 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:11 2011