| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,532,763 – 24,532,860 |
| Length | 97 |
| Max. P | 0.989197 |
| Location | 24,532,763 – 24,532,860 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 72.75 |
| Shannon entropy | 0.48628 |
| G+C content | 0.45470 |
| Mean single sequence MFE | -25.30 |
| Consensus MFE | -11.13 |
| Energy contribution | -11.41 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.989197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24532763 97 + 27905053 --CACCUUUCACUACUCCUUUUUCUCCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGAC------UAUUUGCUUUACCCUGCGUAGGGUAUAGUGACUUG --......((((((..(((..........((((((.....))))))(((((...((...((((.------...))))...))...))))))))..)))))).... ( -26.00, z-score = -3.64, R) >droSim1.chr3R 24231057 97 + 27517382 --CACCUUUCACUACUCCUUUUUCUGCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGGC------UAUUUGCUUUACCCUGCGUAGGGUAUAGUGACUUG --......((((((..........((((((((((..((((((((.........))))))))(((------.....))).......)))))))))))))))).... ( -31.80, z-score = -4.20, R) >droSec1.super_4 3414463 97 + 6179234 --CACCUUUCACUACUCCUUUUCCUGCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGGC------UAUUUGCUUUACCCUUUGUAGGGUAUAGUGACUUG --......((((((..........(((((((((...((((((((.........))))))))(((------.....)))........))))))))))))))).... ( -28.80, z-score = -3.84, R) >droYak2.chr3R 6874966 97 - 28832112 --CUCCUUUCACUACUCCAUUUUCUCCCCUGCGUUUGCAUAACGCAUACGCCAUGUUGUACGAC------UAUUUGCUUUACUCUGCGUAAGGUUUAGUAACUUG --........((((..((...........((((((.....))))))(((((...((.(((....------....)))...))...))))).))..))))...... ( -19.20, z-score = -2.81, R) >droEre2.scaffold_4820 6979604 96 - 10470090 ---CUCUUUCACUACUUCAUUUUCUUCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGAC------UAUUUGCUUUACCCUGCGUAUGGUUUAGAGACUUG ---((((...((((...............((((((.....))))))(((((...((...((((.------...))))...))...)))))))))..))))..... ( -21.40, z-score = -2.66, R) >dp4.chr2 27316658 105 - 30794189 UGUCUUUUUCCUCUGGCUUGUGCCCGCACAGUAUAUGCAUAACGCAUACGCCACGUUGCACGAUAUGCAACAUAAAUGUUACUCUUGAAAGGGUAUAUCUAUUCA ((((((((((...(((((((((....)))))..(((((.....))))).)))).((((((.....))))))...............))))))).)))........ ( -25.80, z-score = -1.41, R) >droPer1.super_7 862782 105 + 4445127 UGUCUUUUUCCUCUGGCUUGUGCCCCCACAGUAUAUGCAUAACGCAUACGCCACGUUGCACGAUAUGCAACAUAAAUGUUACUCUUGAAAGGGUAUAUCUAUUCA ((((((((((...(((((((((....)))))..(((((.....))))).)))).((((((.....))))))...............))))))).)))........ ( -24.10, z-score = -1.33, R) >consensus __CACCUUUCACUACUCCUUUUUCUCCCCUGCGUUUGCAUAACGCAUACGCCACGUUGUGCGAC______UAUUUGCUUUACCCUGCGUAGGGUAUAGUGACUUG ..............................((((.(((.....))).))))..((.....)).................((((((....)))))).......... (-11.13 = -11.41 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:10 2011