| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,935,698 – 8,935,812 |
| Length | 114 |
| Max. P | 0.554277 |
| Location | 8,935,698 – 8,935,812 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.84 |
| Shannon entropy | 0.47158 |
| G+C content | 0.52056 |
| Mean single sequence MFE | -36.23 |
| Consensus MFE | -21.98 |
| Energy contribution | -23.26 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8935698 114 + 23011544 UUUCCGCCCAUGCGGUCAGCCUAGGAGCUGCAGGGGUGGUCAUUGCCAUCCUCCAGGUGAGUUAUGGUGCUGAAAUAGCUCAAAGACUGGUUGGUCUAAAAUAGAAAGAACUAU ...((((((.((((((...(....).)))))).)))))).....((((....((((.((((((((.........))))))))....)))).))))................... ( -37.80, z-score = -1.20, R) >droEre2.scaffold_4929 9532499 96 + 26641161 UUUCCGCCCACGCGGUCAGCCUGGGGGCGGCGGGCGUGGUCAUUGCUGUGCUCCAGGUGAAUGACAAC-CUUCUAUGAAAUAAUGACUAUGCA-UCUA---------------- ...((((((.((.((....)))).))))))...((((((((((((.........((((........))-)).........)))))))))))).-....---------------- ( -34.97, z-score = -1.19, R) >droYak2.chr2L 11585303 107 + 22324452 UUUCCGCCCACGCGGUCAGCUUGGGGGCGGCGGGCGUGGUCAUUGCCAUCCUCCAGGUGAGUUAAGCUCCU---UUUCACUAAUUACUGGAUGUAUUGACAUAUAAAUAG---- ....(((((.(((..((.....))..)))..)))))..((((.(((.((((....((((((..........---.)))))).......))))))).))))..........---- ( -30.70, z-score = 0.11, R) >droSec1.super_3 4410070 110 + 7220098 UUUCCGCCCAUGCGGUCAGCCUGGGAGCGGCAGGCGUGGUCAUUGCCGUCCUCCAGGUGAGUUAUGGUGCUGAAAUAGCUCAAGUACUGUUUGGCCUAAAAUAUAACUAG---- .....(((...((((((.(((((((..((((((.........))))))..).))))))(((((((.........)))))))..).)))))..)))...............---- ( -37.90, z-score = -1.08, R) >droSim1.chr2L 8715463 110 + 22036055 UUUCCGCCCAUGCGGUCAGCCUGGGAGCGGCAGGUGUGGUCAUUGCCGUCCUCCAGGUGAGUUAUGGUGCUGAAAUAGCUCAUGUACUGUUUGGCCUAAAAUAUAACUAG---- .....(((...((((((((((((((..((((((.((....))))))))..).))))))(((((((.........))))))).)).)))))..)))...............---- ( -39.80, z-score = -1.80, R) >consensus UUUCCGCCCAUGCGGUCAGCCUGGGAGCGGCAGGCGUGGUCAUUGCCGUCCUCCAGGUGAGUUAUGGUGCUGAAAUAGCUCAAGUACUGUUUGGCCUAAAAUAUAAAUAG____ ...((((....))))...(((((((.(((((((.........))))))).).))))))(((((((.........)))))))................................. (-21.98 = -23.26 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:20 2011