Locus 11919

Sequence ID	dm3.chr3R
Location	24,527,684 – 24,527,776
Length	92
Max. P	0.678804

overview

Window 9

Location	24,527,684 – 24,527,776
Length	92
Sequences	10
Columns	113
Reading direction	reverse
Mean pairwise identity	72.53
Shannon entropy	0.55048
G+C content	0.48422
Mean single sequence MFE	-25.67
Consensus MFE	-16.67
Energy contribution	-15.83
Covariance contribution	-0.84
Combinations/Pair	1.59
Mean z-score	-0.64
Structure conservation index	0.65
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.40
SVM RNA-class probability	0.678804
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 24527684 92 - 27905053
----------UAUGGCUGGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCGCCGGAUUCCACCGAAUCAUCCG-----------
----------...((.((((...((......)).((((((((((((.(((.............))))))))))))))).))))(((((....)))))..)).----------- ( -28.12, z-score =  -0.84, R)
>droSim1.chr3R 24226798 92 - 27517382
----------UAUGGCUGGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCGCCGGAUUCCACCGAAUCAUCCG-----------
----------...((.((((...((......)).((((((((((((.(((.............))))))))))))))).))))(((((....)))))..)).----------- ( -28.12, z-score =  -0.84, R)
>droSec1.super_4 3409418 92 - 6179234
----------UAUGGCUGGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCGCCGGAUUCCACCGAAUCAUCCG-----------
----------...((.((((...((......)).((((((((((((.(((.............))))))))))))))).))))(((((....)))))..)).----------- ( -28.12, z-score =  -0.84, R)
>droYak2.chr3R 6869892 92 + 28832112
----------UAUGGCUGGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCCCCGGAUUCCACCGUAUCAUCCG-----------
----------(((((.(((.....(((....((.((((((((((((.(((.............))))))))))))))).)))))...)))))))).......----------- ( -26.72, z-score =  -0.75, R)
>droEre2.scaffold_4820 6970757 92 + 10470090
----------UAUGGCUGUCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCGCCGGAUUCCACCGUAUCAUCCG-----------
----------...(((.......((......)).((((((((((((.(((.............))))))))))))))).)))((((...........)))).----------- ( -25.62, z-score =  -0.42, R)
>droAna3.scaffold_13340 17334028 96 - 23697760
------UAUAGUCAGCUAGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCUGAUUCCUGUUGCUUCCCCUGGCUCGCCGGGAUCCUCCA-----------
------....((.((((((.......(((..(((((....(((((.(((.......))).))))))))))...))).....)))))).)).(((....))).----------- ( -25.60, z-score =   0.32, R)
>dp4.chr2 27310760 110 + 30794189
-CAUACGCUGUAUAGUC--CUCACCUGCGUUGGAGUGCGACAACAGAUUGUUAAAGAAUGUGCCAAUUGUUGUUGCAUCGCCGGUUUCUAUCGCAUCCUCCGAUGUGGUCCCC
-................--...(((.((((((((((((((((((((.(((.((.......)).))))))))))))))..((.(((....)))))...)))))))))))).... ( -30.70, z-score =  -1.33, R)
>droPer1.super_7 856887 110 - 4445127
-CAUACGCUGUAUAGUC--CUCACCUGCGUUGGAGUGCGACAACAGAUUGUUAAAGAAUGUGCCAAUUGUUGUUGCAUCGCCGGUUUCUAUCGUAUCCUCCGAUGUGGUCCCC
-................--...(((.((((((((((((((((((((.(((.((.......)).))))))))))))))....((((....))))....)))))))))))).... ( -30.00, z-score =  -1.44, R)
>droWil1.scaffold_181089 9242025 84 - 12369635
-------------AUUGUACCCACCUGCAUUGGAAUGCGACAGCAGAUUGUUAAAAAAUGUGCCAAUAGUCGUUGCAUCCGUCG------UCGAAUCAUUCGU----------
-------------...........(.((..((((.((((((.(((.(((.......))).)))(....)..))))))))))..)------).)..........---------- ( -14.90, z-score =   0.78, R)
>droGri2.scaffold_14624 4128946 101 + 4233967
UAUAUAUUGAUUUGAAUAGCUUACCUGAAUGUGAAUGUGACAACAAAUUAUUGAAGAAUGUACCGAUUGUUGUUACAUCUGGCA-UUGACCCGGUUGACUCU-----------
................(((((....(.(((((.(((((((((((((..(((........)))....)))))))))))).).)))-)).)...))))).....----------- ( -18.80, z-score =  -1.07, R)
>consensus
__________UAUGGCUGGCUCACCUGCAUUGGAAUGCGACAGCAGAUUGUUGAAGAAUGUGCCAAUUGCUGUUGCAUCGCCGGAUUCCACCGAAUCAUCCG___________
..............................((((((((((((((((.(((.............)))))))))))))))...(((......))).....))))........... (-16.67 = -15.83 +  -0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:09 2011