| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,527,554 – 24,527,660 |
| Length | 106 |
| Max. P | 0.854137 |
| Location | 24,527,554 – 24,527,660 |
|---|---|
| Length | 106 |
| Sequences | 9 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 91.81 |
| Shannon entropy | 0.17552 |
| G+C content | 0.47720 |
| Mean single sequence MFE | -32.94 |
| Consensus MFE | -25.83 |
| Energy contribution | -25.68 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24527554 106 + 27905053 CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAUGCCGAAAUCACAAUUGCCGGCAGCAAAG--------- .((((.((((((((......(((((......))))).((((..(((....(((.....)))...((((((....)))))))))..))))..))))))))))))...--------- ( -38.20, z-score = -4.16, R) >droSim1.chr3R 24226659 111 + 27517382 CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAUGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAA---- .((((.((((((((......(((((......))))).((((..(((....(((.....)))...((((((....)))))))))..))))..))))))))))))........---- ( -38.20, z-score = -3.40, R) >droSec1.super_4 3409279 111 + 6179234 CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAUGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAA---- .((((.((((((((......(((((......))))).((((..(((....(((.....)))...((((((....)))))))))..))))..))))))))))))........---- ( -38.20, z-score = -3.40, R) >droYak2.chr3R 6869744 115 - 28832112 CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAAGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAACAGC .((((.((((((((.((((...........(((((((......))))..))).............))))(((((((....)))))))....))))))))))))............ ( -34.05, z-score = -2.16, R) >droEre2.scaffold_4820 6970618 111 - 10470090 CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAAGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAA---- .((((.((((((((.((((...........(((((((......))))..))).............))))(((((((....)))))))....))))))))))))........---- ( -34.05, z-score = -2.36, R) >droAna3.scaffold_13340 17333889 111 + 23697760 CUGCUCGCUGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUUGAUUUCGAAGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAG---- ((((((((((.(.(((((...........((..(((((.(((((.....)))..)).)))))..))..((((((((....))))))))..))))).).))))...))))))---- ( -34.40, z-score = -2.32, R) >dp4.chr2 27310623 111 - 30794189 CUACUAGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAGGCCGAAAUCACAAUUGCUGGCAGCAAAGAGCAC---- ......((((((((.((((...........(((((((......))))..))).............))))(((((((....)))))))....)))))))).((.....))..---- ( -28.65, z-score = -1.40, R) >droPer1.super_7 856744 111 + 4445127 CUACUAGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAGGCCGAAAUCACAAUUGCUGGCAGCAAAGAGCAC---- ......((((((((.((((...........(((((((......))))..))).............))))(((((((....)))))))....)))))))).((.....))..---- ( -28.65, z-score = -1.40, R) >droGri2.scaffold_14624 4128809 108 - 4233967 CUGCUUGCU---AGUGAUGACAGAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCCUUCAAUAGCAUUGAUUUUGAUGCGGAAAUAACAAUUGCUGGUGUAAGGGAGGAA---- ((((...(.---...)..).))).((((..(((....)))((((((.((((......(((....(((((......))))).)))......)))).))))))..))))....---- ( -22.10, z-score = 0.85, R) >consensus CUGCUCGCCGGCAGCGAUGACAAAUCCCAGCAUUUGAGUGACAUCGACAAUGAAUCUUUCAACAGCAUCGAUUUCGAUGCCGAAAUCACAAUUGCCGGCAGCAAAGAGCAA____ ......(((((((((((((.(((((......))))).....)))).....(((.....)))...))...(((((((....))))))).....)))))))................ (-25.83 = -25.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:08 2011