| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,527,202 – 24,527,300 |
| Length | 98 |
| Max. P | 0.857063 |
| Location | 24,527,202 – 24,527,300 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.21787 |
| G+C content | 0.64748 |
| Mean single sequence MFE | -32.44 |
| Consensus MFE | -29.94 |
| Energy contribution | -29.94 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24527202 98 - 27905053 CCGCCACUACGACACCAUCCUCGUCCCGCUGCUGCCGGUGUCCUUGCCCCUGCUUGUCCUCAUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA ........((((........))))...(((((.(((((((((...((...((((((.((((....))))))).)))...)).))))))).))))))). ( -31.60, z-score = -1.10, R) >droSim1.chr3R 24226328 98 - 27517382 CCGCCACAACGACUUCAUCCUCGUCCCGCUGCUGCCGGUGUCCUUGCCCCUGCUUGUCCUCGUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA ........((((........))))...(((((.(((((((((...((...((((((.((((....))))))).)))...)).))))))).))))))). ( -32.20, z-score = -1.08, R) >droSec1.super_4 3408948 98 - 6179234 CCGCCACAACGACUUCAUCCUCGUCCCGCUGCUGUCGGUGUCCUUGCCCCUGCUUGUCCUCAUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA ..(((.((((((........))))..(((.((.(((((((..........((((((.((((....))))))).)))..))))))))).))))).))). ( -31.50, z-score = -1.23, R) >droYak2.chr3R 6869386 98 + 28832112 CCGCCACGAUGCCAUCAUCCUCGUCCCGCUGCUGGCGGUGUCCUUGCCCCUGCUUGUCCUCAUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA .......((((....))))........(((((..((((((((...((...((((((.((((....))))))).)))...)).))))))))..))))). ( -34.40, z-score = -0.79, R) >droEre2.scaffold_4820 6970317 79 + 10470090 -------------------CUCCUCCUGCUGCUGGCGGUGUCCUUGCCCCUGCUUGUCCUCAUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA -------------------........(((((..((((((((...((...((((((.((((....))))))).)))...)).))))))))..))))). ( -32.50, z-score = -2.74, R) >consensus CCGCCACAACGACAUCAUCCUCGUCCCGCUGCUGCCGGUGUCCUUGCCCCUGCUUGUCCUCAUCCGAGGCAACGCAUUCGCUGAUGCUGCGUGCGGCA ...........................(((((((.(((((((...((...((((((.((((....))))))).)))...)).))))))))).))))). (-29.94 = -29.94 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:07 2011