| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,526,977 – 24,527,080 |
| Length | 103 |
| Max. P | 0.571639 |
| Location | 24,526,977 – 24,527,080 |
|---|---|
| Length | 103 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Shannon entropy | 0.30606 |
| G+C content | 0.47108 |
| Mean single sequence MFE | -31.99 |
| Consensus MFE | -19.11 |
| Energy contribution | -18.86 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24526977 103 + 27905053 --ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGGA---ACGAGGUCAG-GCCAAAUUUGCAUUUGCAUUUGCCGCCAGCGGA --.......((((((..((((...))))..))))))(((....)))(((((((.(((((((.---.(((((....-.))....)))..))))))).)))))))...... ( -33.20, z-score = -1.77, R) >droSim1.chr3R 24226109 97 + 27517382 --ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCCUUUAGGCGGCGGCACAUGCAGGA---ACGAGGUCAG-GCCAAAUUUGCAUUUGC------CGCCAGCGGA --.......((((((..((((...))))..))))))(((....)))(((((((.(((((((.---....((....-.))...))))))).)))------))))...... ( -34.80, z-score = -2.69, R) >droSec1.super_4 3408729 97 + 6179234 --ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGGA---ACGAGGUCAG-GCCAAAUUUGCAUUUGC------CGCCAGCGGA --.......((((((..((((...))))..))))))(((....)))(((((((.(((((((.---....((....-.))...))))))).)))------))))...... ( -32.50, z-score = -2.28, R) >droYak2.chr3R 6869158 103 - 28832112 --ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGGA---ACGAGGUCAG-GCCAAAUUUGCAUUUGCAUUUGCCGCCAGCGGA --.......((((((..((((...))))..))))))(((....)))(((((((.(((((((.---.(((((....-.))....)))..))))))).)))))))...... ( -33.20, z-score = -1.77, R) >droEre2.scaffold_4820 6970092 103 - 10470090 --ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGGA---ACGAGGUCAG-GCGAAAUUUGCAUUUGCAUUUGCCGCCAGCGGA --.......((((((..((((...))))..))))))(((....)))(((((((.(((((((.---.((((.((..-..))..))))..))))))).)))))))...... ( -33.10, z-score = -1.93, R) >droAna3.scaffold_13340 17333391 94 + 23697760 --GCACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGC---ACAUGCAGGA---ACGAGGUCAG-GCCAAAUUUGCAUUUGC------CGCCAGCGCA --((.....((((((..((((...))))..))))))(((....((((((---(.(((((((.---....((....-.))...))))))).)))------))))))))). ( -33.90, z-score = -2.81, R) >dp4.chr2 27310035 100 - 30794189 --CCACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGCAGCAACGAGGUCAA-ACCAAAUUUGCAUUUGC------CGCCAGCGCA --............................((((..(((....)))(((((((.(((((((......).((....-.))....)))))).)))------)))).)))). ( -30.70, z-score = -1.27, R) >droPer1.super_7 856148 100 + 4445127 --CCACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGCAGCAACGAGGUCAA-ACCAAAUUUGCAUUUGC------CGCCAGCGCA --............................((((..(((....)))(((((((.(((((((......).((....-.))....)))))).)))------)))).)))). ( -30.70, z-score = -1.27, R) >droVir3.scaffold_13047 8847767 99 - 19223366 GCCCACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCGCAUGCAAAA----UGAGGUCAACGGGAAAUUUGCAUUCGC------CACCGCCAGC .........((((((..((((...))))..)))))).......(((((.((((.(((((((.----...(.....)......))))))).)))------).)))))... ( -33.30, z-score = -1.90, R) >droMoj3.scaffold_6540 5637810 99 - 34148556 GCCCACACAAUGCACAUAUGAAAAUUAUUGGUGCAUGCUUUUAGGCGGCGGUGCAUGCAAAA----UGAGGUCAAAACGAAAUUUGCAUACAC------CGCCAGCAAC (((......((((((..((....)).....)))))).......)))(((((((.(((((((.----(..(.......)..).))))))).)))------))))...... ( -35.12, z-score = -3.36, R) >droGri2.scaffold_14624 4128259 93 - 4233967 --CCACACAAUGCGCAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGUGGAGCAUGUAAAA----UGGGGUCAAAAUGAAAUUUGCAU-UGCAU------AUAGC--- --.....((((((((((.(((...(((((..((((((((((........)))))))))).))----)))..)))..))).....)))))-))...------.....--- ( -21.40, z-score = -0.06, R) >consensus __ACACACAAUGCACAUAUGAAAAUUAUUAGUGCAUGCUUUUAGGCGGCGGCACAUGCAGGA___ACGAGGUCAG_GCCAAAUUUGCAUUUGC______CGCCAGCGGA .........((((((..((((...))))..))))))(((....)))(((((((.(((((((.....................))))))).)))......))))...... (-19.11 = -18.86 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:07 2011