| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,523,559 – 24,523,649 |
| Length | 90 |
| Max. P | 0.612432 |
| Location | 24,523,559 – 24,523,649 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 78.46 |
| Shannon entropy | 0.39457 |
| G+C content | 0.32183 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -8.60 |
| Energy contribution | -8.95 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24523559 90 - 27905053 --UUUGGUAAGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUU-UAGCUGCAGAGCCAG-CACGAACCUAACAAUAUAU --....((.((((........(((.(((((((((....(((((((.....))))))).-.))))))))).))).-.....)))).))....... ( -24.34, z-score = -3.62, R) >droSim1.chr3R 24222677 90 - 27517382 --UUUGGUAAGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUU-UAGCUGCAGAGCCAG-CACGAACCUAACAAUAUAU --....((.((((........(((.(((((((((....(((((((.....))))))).-.))))))))).))).-.....)))).))....... ( -24.34, z-score = -3.62, R) >droSec1.super_4 3405337 90 - 6179234 --UUUGGUAAGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUGUU-UAGCUGCAGAGCCAG-CACGAACCUAACAAUAUAU --....((.((((........(((.(((((((((....(.(((((.....))))).).-.))))))))).))).-.....)))).))....... ( -22.84, z-score = -2.68, R) >droYak2.chr3R 6865686 90 + 28832112 --UUUGGUAAGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUU-UAGCUGCAGACCCAG-CGCAGACCCAACAAUAUUU --....((..(((........(((.(((((((((....(((((((.....))))))).-.))))))))).))).-.....)))..))....... ( -23.14, z-score = -3.01, R) >droAna3.scaffold_13340 17330065 89 - 23697760 --UCUAAAAUGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAACAUUUUU-UAGCCAACUACGCGA--GCUUACCUAACAAUAUAU --........((((...(((.((.......((((....(((((.........))))).-.)))).....)).))--)..))))........... ( -9.30, z-score = 0.76, R) >dp4.chr2 27306571 82 + 30794189 UUGUUGGUCUGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUUCCAGCCAACCGUCCAACCAUAUAC------------ ..(((((.(.(((......((......)).((((....(((((((.....)))))))...)))).)))).))))).......------------ ( -16.70, z-score = -1.54, R) >droPer1.super_7 852703 82 - 4445127 UUGUUGGUCUGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUUCCAGCCAACCGUCCAACCAUAUAC------------ ..(((((.(.(((......((......)).((((....(((((((.....)))))))...)))).)))).))))).......------------ ( -16.70, z-score = -1.54, R) >consensus __UUUGGUAAGGUAUUUUUCAUGGAUUUGCGGCUUUUUAGAAUAUUAAAAAUAUUUUU_UAGCUGCAGAGCCAG_CACAAACCUAACAAUAUAU ..........(((........(((......((((....(((((((.....)))))))...))))......))).......)))........... ( -8.60 = -8.95 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:06 2011