| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,517,486 – 24,517,578 |
| Length | 92 |
| Max. P | 0.655502 |
| Location | 24,517,486 – 24,517,578 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.21 |
| Shannon entropy | 0.47230 |
| G+C content | 0.40247 |
| Mean single sequence MFE | -20.58 |
| Consensus MFE | -13.69 |
| Energy contribution | -13.14 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.45 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24517486 92 - 27905053 CGGCGGCGAUGUCAAUGCUAAUUCCAUCAGUUCAAGUUGAAUUAUUUCCAAAUGUUCACCUUGAAAUGUAAGAAAUG--C--CCGCAGCUAUCACA---------------- ..(((((((((..(((....))).))))..((((((.(((((...........))))).))))))...........)--.--))))..........---------------- ( -19.00, z-score = -0.71, R) >droSim1.chr3R 24215176 92 - 27517382 CGGCGGCGAUGUCAAUGCUAAUUCCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAUGUAAGAAAUG--C--CCGCAGCUAUCACA---------------- ..((((((...((..((((......)))).((((((.(((((...........))))).))))))......))..))--.--))))..........---------------- ( -20.80, z-score = -0.65, R) >droSec1.super_4 3399229 92 - 6179234 CGGCGGCGAUGUCAAUGCUAAUUCCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAUGUAAGAAAUG--C--UCGCAGCUAUCACA---------------- .(((.((((.......((...(((..(((.((((((.(((((...........))))).)))))).)))..)))..)--)--)))).)))......---------------- ( -22.41, z-score = -1.06, R) >droYak2.chr3R 6859537 92 + 28832112 CGGCGGCGAUGUCAAUGCUAAUUUCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAUGUAAGAAAUG--C--CAGCAGCUAUCACA---------------- .(..((((....)..((((.(((((.(((.((((((.(((((...........))))).)))))).)))..))))).--.--.)))))))..)...---------------- ( -22.40, z-score = -1.15, R) >droEre2.scaffold_4820 6960442 92 + 10470090 CGGCGGCGAUGUCAAUGCUAAUUCCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUUACCUUGAAAUGUAAGAAAUG--C--CCGCAGCUAUCACA---------------- ..((((((...((..((((......)))).((((((.(((((...........))))).))))))......))..))--.--))))..........---------------- ( -18.60, z-score = -0.01, R) >droAna3.scaffold_13340 17324253 101 - 23697760 CUGCCGCGAUGUCAAUGUUAAUUCCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAA-GUAGCUGUGUCUUUUCACAGUCAGCUAUCAACGA---------- ((((.(.((.............))).))))((((((.(((((...........))))).)))))).(-((.((((((......))))))..)))........---------- ( -21.42, z-score = -0.98, R) >dp4.chr2 27300553 110 + 30794189 CAGCGACGAUGUCAAUGCUAAUUCCCGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAAGUAAGAAAUA--UAGUUGUAGCAUUUCCCCACCUCCCCCAGCCAG ..(((((...)))(((((((.(((..((..((((((.(((((...........))))).))))))..))..)))...--......)))))))...............))... ( -19.00, z-score = -2.23, R) >droPer1.super_7 846594 110 - 4445127 CAGCGACGAUGUCAAUGCUAAUUCCCGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAAGUAAGAAAUA--UAGUUGUAGCAUUUCCCCUCCUACCCCAGCCAG ..(((((...)))(((((((.(((..((..((((((.(((((...........))))).))))))..))..)))...--......)))))))...............))... ( -19.00, z-score = -2.01, R) >droWil1.scaffold_181089 9231317 103 - 12369635 CAACGACGAUGUCAAUGUUAAUUUCGACAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAAGUAAGAAAUA--UUUUCGCAUUCAGCUAUCAAAUGCCG------- ....(((...))).......(((((.((..((((((.(((((...........))))).))))))..))..))))).--.....(((((.........)))))..------- ( -16.30, z-score = 0.11, R) >droVir3.scaffold_13047 8835743 104 + 19223366 CAACGGCGAUGUCAAUGUUAAUUUCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAACGGAGACAUG-UUUUUCGCAGUCGGCUAAAAAAUGCCG------- .....((((.....(((((....((.....((((((.(((((...........))))).))))))....))))))).-....))))...((((........))))------- ( -24.80, z-score = -1.16, R) >droMoj3.scaffold_6540 5626224 104 + 34148556 CAACGGCGAUGUCAAUGUUAAUUUCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAUCGGAGACAUG-UUUUUCGCAGUCAACUAACAAAUGCCG------- ...(((((....)..(((((...((.....((((((.(((((...........))))).))))))....))(((.((-(.....))))))...)))))...))))------- ( -21.80, z-score = -0.64, R) >droGri2.scaffold_14624 4117155 94 + 4233967 UAACGGCAGUGUCAAUGCUAUUUUCAGCGGUUCAAGUUGAAUUAUUUCGAAAGGUUCACCUUGCAAACGGAGACAUG--UUUUCGCAGUCGUUUAA---------------- .((((((........(((....((((((.......)))))).........((((....)))))))..((((((....--))))))..))))))...---------------- ( -21.40, z-score = -0.83, R) >consensus CAGCGGCGAUGUCAAUGCUAAUUCCAGCAGUUCAAGUUGAAUUAUUUCGAAAUGUUCACCUUGAAAAGUAAGAAAUG__U__UCGCAGCCAUCACA________________ ..((.(((.......((((......)))).((((((.(((((...........))))).))))))..................))).))....................... (-13.69 = -13.14 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:04 2011