| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,502,298 – 24,502,394 |
| Length | 96 |
| Max. P | 0.519436 |
| Location | 24,502,298 – 24,502,394 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.85 |
| Shannon entropy | 0.35271 |
| G+C content | 0.41560 |
| Mean single sequence MFE | -22.58 |
| Consensus MFE | -11.59 |
| Energy contribution | -11.78 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24502298 96 + 27905053 -----------GACUGCUUAGCCUCGCUCGGCAACGGCUGGCUGGCUUUCAGCAAGCACUUAGCAUUU-AAUUUAACUAAUUGCAAAUUUCAAUAAUUUCCCUAACAA -----------((..(((.((((..((.((....)))).)))))))..)).....(((.((((.....-.......)))).)))........................ ( -22.00, z-score = -1.27, R) >droSim1.chr3R 24199715 91 + 27517382 -----------GACUGCUUAGCCUCGCUCGGCAACGGCUGGCUGGCUUUCAGCA----CUUAGCAUUU-AAUUUAACUAAUUGCAAAUUCCAAUAAUUUCCCUAACA- -----------((..(((.((((..((.((....)))).)))))))..)).(((----.((((.....-.......)))).))).......................- ( -22.00, z-score = -2.06, R) >droSec1.super_4 3384344 91 + 6179234 -----------GACUGCUUAGCCUCGCUCGGCAACGGCUGGCUGGCUUUCAGCA----CUUAGCAUUU-AAUUUAACUAAUUGCUAAUUCCAAUAAUUUCCCUAACA- -----------((..(((.((((..((.((....)))).)))))))..))....----.((((((.((-(.......))).))))))....................- ( -23.20, z-score = -2.56, R) >droYak2.chr3R 6844340 91 - 28832112 -----------GACUGCUUAGCCUCGCUCGGCAACGGCUGGCUGGCUUUCAGCA----CUUAGCAUUU-AAUAUAACUAAUUGCAAAUUUCAAUAAUUUCCCUCACA- -----------((..(((.((((..((.((....)))).)))))))..)).(((----.((((.....-.......)))).))).......................- ( -22.00, z-score = -2.27, R) >droEre2.scaffold_4820 6945307 91 - 10470090 -----------GACUGCUUAGCCUCGCUCGGAAACGGCUGGCUGGCUUUCAGCA----CUUAGCAUUU-AAUAUAACUAAUUGCAAAUUUCAAUAAUUUCCCUAACA- -----------((..(((.((((..((.((....)))).)))))))..)).(((----.((((.....-.......)))).))).......................- ( -22.50, z-score = -2.61, R) >droVir3.scaffold_13047 8815818 104 - 19223366 ACAAGCUGGCGAGCCUUUAAAUAGAACCCAGGGCCGUCUGCCUGAAUUUAAGUG----UUAGACAUUUUAAUUUGUCUAAUUGCAAAUUUCAAUAAUUUCACUGCGCU .((.((.((((.(((((............))))))))).)).))......((((----(((((((........))))))..((.(((((.....)))))))..))))) ( -23.80, z-score = -1.18, R) >consensus ___________GACUGCUUAGCCUCGCUCGGCAACGGCUGGCUGGCUUUCAGCA____CUUAGCAUUU_AAUUUAACUAAUUGCAAAUUUCAAUAAUUUCCCUAACA_ ...........((..(((.((((..((.((....)))).)))))))..)).((.........))............................................ (-11.59 = -11.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:52:00 2011