| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,922,390 – 8,922,483 |
| Length | 93 |
| Max. P | 0.739295 |
| Location | 8,922,390 – 8,922,483 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Shannon entropy | 0.41615 |
| G+C content | 0.54521 |
| Mean single sequence MFE | -26.49 |
| Consensus MFE | -13.98 |
| Energy contribution | -15.22 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8922390 93 + 23011544 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGAAUGCCAUGCGACAA------AGCACUUUUACGCCUCGCAU-GGGACACACC -----....(((((((((.(((((((.............))))))))))).......((((((((...------.((........)).))))))-)))))))... ( -30.72, z-score = -2.67, R) >droPer1.super_5 1726607 98 - 6813705 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGACCCGUUGCCGAAUGCCGAAUGCCAUACGACAAUC--CAAACACUUUAACGCCCCACACCGGGACACACC -----..(((((((((((.(((((.....(((.((.........)).))).....))))).)))).....--..)))))))....(.(((.....))).)..... ( -21.41, z-score = -1.31, R) >droAna3.scaffold_12916 10586824 93 + 16180835 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGAAUGCCAUGCGACAC------ACCGCUUCUACGCCCCACAU-UGGACACACC -----....((((.((((.(((((((.............)))))))..(((.....)))..)))).))------)).((......)).((....-.))....... ( -22.62, z-score = -0.94, R) >droEre2.scaffold_4929 9519184 93 + 26641161 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACAGCCGAAUGCCAUGCGACAA------AGCACUUUUACGCCUCGCAU-GGGACACACC -----....((((.((((.(((((((.............))))))))).........((((((((...------.((........)).))))))-)))).)))). ( -28.82, z-score = -2.59, R) >droYak2.chr2L 11571626 93 + 22324452 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGACUGCCAUGCGACAA------AGCACUUUUACGCCUCGCAU-GGGACACACC -----....(((((((((.(((((((.............))))))))))).......((((((((...------.((........)).))))))-)))))))... ( -30.72, z-score = -2.71, R) >droSec1.super_3 4396470 93 + 7220098 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGAAUGCCAUGCGACAA------AGCACUUUUACGCCUCGCAU-GGGACACACC -----....(((((((((.(((((((.............))))))))))).......((((((((...------.((........)).))))))-)))))))... ( -30.72, z-score = -2.67, R) >droSim1.chr2L 8701876 93 + 22036055 -----UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGAAUGCCAUGCGACAA------AGCACUUUUACGCCUCGCAU-GGGACACACC -----....(((((((((.(((((((.............))))))))))).......((((((((...------.((........)).))))))-)))))))... ( -30.72, z-score = -2.67, R) >droVir3.scaffold_12723 4962759 102 + 5802038 AGCAGCGGGCCACUCCCCCCAUCUACUCGCCUACUCCCCAGUUACACAUACUAUGUAUGGUUGUGUAUUGUGCCAACACUCAUACGCCCCAUUA---GACACACC ....(.((((................................((((((.((((....))))))))))..(((....)))......)))))....---........ ( -16.20, z-score = 0.92, R) >consensus _____UCAAGUGUUUCGUCUGGCAACUUUCAUACGCCCCGUUGCCAACGGCCGAAUGCCAUGCGACAA______AGCACUUUUACGCCUCGCAU_GGGACACACC .........(((((((((((((((((.............)))))))..(((.....)))....)))...................(.....)...)))))))... (-13.98 = -15.22 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:19 2011