Locus 11907

Sequence ID	dm3.chr3R
Location	24,491,706 – 24,491,796
Length	90
Max. P	0.663999

overview

Window 3

Location	24,491,706 – 24,491,796
Length	90
Sequences	4
Columns	90
Reading direction	reverse
Mean pairwise identity	85.85
Shannon entropy	0.21299
G+C content	0.51557
Mean single sequence MFE	-28.62
Consensus MFE	-19.95
Energy contribution	-20.14
Covariance contribution	0.19
Combinations/Pair	1.13
Mean z-score	-2.07
Structure conservation index	0.70
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.37
SVM RNA-class probability	0.663999
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 24491706 90 - 27905053
UCGAAAGAAAAGGAAAUCUGGCAAGCUGAAAGGUGGAGCUGGAGGUGGAUGUGGAGGUUUAGGUCCUGACCCCCAUCUUGGCCAGAAAAU
((....))........((((((..(((....))).(((.(((.(((((((.(((....))).))))..))).))).))).)))))).... ( -29.50, z-score =  -1.81, R)
>droSim1.chr3R 24189120 78 - 27517382
UCGAAAGAAAAGGAAAUCUGGCAAGCUGAAAGGUGGAGCUGGAGGUGGAGG------------UCCUGACCCCCAUCUCGCCCAGAAAAU
((....))........((((((.((((.........)))).(((((((.((------------(....))).)))))))).))))).... ( -27.50, z-score =  -2.08, R)
>droSec1.super_4 3373850 84 - 6179234
UCGAAAGAAAAGGAAAUCUGGCAAGCUGAAAGGUGGAGCUGGAGGUGGAGGUGGAGG------UCCUGACCCCCAUCUUGGCCAGAAAAU
((....))........((..((..(((....)))...))..))(((.(((((((.((------(....))).))))))).)))....... ( -33.40, z-score =  -3.42, R)
>droEre2.scaffold_4820 6932466 78 + 10470090
UCGACAGAAAAGGAAAGCUGGAAAGCUGAAAGGUGGAGAUGGAGGUGGAGG------------UCCUGACCCCCAUCUUCCUCGGAAAAU
((.((..........((((....)))).....)).))((.((((((((.((------------(....))).)))))))).))....... ( -24.06, z-score =  -0.97, R)
>consensus
UCGAAAGAAAAGGAAAUCUGGCAAGCUGAAAGGUGGAGCUGGAGGUGGAGG____________UCCUGACCCCCAUCUUGCCCAGAAAAU
((....))........((((((..(((....))).(((.(((.((((((..............)))..))).))).))).)))))).... (-19.95 = -20.14 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:55 2011