| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,485,854 – 24,485,921 |
| Length | 67 |
| Max. P | 0.693736 |
| Location | 24,485,854 – 24,485,921 |
|---|---|
| Length | 67 |
| Sequences | 10 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 82.04 |
| Shannon entropy | 0.38744 |
| G+C content | 0.35751 |
| Mean single sequence MFE | -16.06 |
| Consensus MFE | -6.26 |
| Energy contribution | -6.87 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24485854 67 - 27905053 GGGGGCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC ....((((....))))...--.((((((..((((((-((....))))))))....))))))......... ( -19.60, z-score = -3.77, R) >droSim1.chr3R 24183386 67 - 27517382 GGUGGCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC .((.((((....))))...--.((((((..((((((-((....))))))))....))))))))....... ( -19.70, z-score = -3.66, R) >droSec1.super_4 3368147 67 - 6179234 GGUGGCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC .((.((((....))))...--.((((((..((((((-((....))))))))....))))))))....... ( -19.70, z-score = -3.66, R) >droYak2.chr3R 6829284 67 + 28832112 GGGGGCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC ....((((....))))...--.((((((..((((((-((....))))))))....))))))......... ( -19.60, z-score = -3.77, R) >droEre2.scaffold_4820 6925066 67 + 10470090 GGGGGCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC ....((((....))))...--.((((((..((((((-((....))))))))....))))))......... ( -19.60, z-score = -3.77, R) >droAna3.scaffold_13340 17293590 66 - 23697760 -GGGUCGGAAAUCCGCAAA--UGUGCAAGUUAAAUA-UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC -..(.(((....))))...--.((((((..((((((-((....))))))))....))))))......... ( -15.80, z-score = -2.52, R) >dp4.chr2 27259793 67 + 30794189 UGGGUCGGAAAUCCGCAAA--UGUACAAGUUAAAUA-UUGAAAAGUAUUCGUUGAUUGUACGCCAUAAAC ((((.(((....))))...--.((((((....((((-((....))))))......)))))).)))..... ( -15.10, z-score = -2.03, R) >droPer1.super_7 810240 67 - 4445127 UGGGUCGGAAAUCCGCAAA--UGUACAAGUUAAAUA-UUGAAAAGUAUUCGUUGAUUGUACGCCAUAAAC ((((.(((....))))...--.((((((....((((-((....))))))......)))))).)))..... ( -15.10, z-score = -2.03, R) >droWil1.scaffold_181089 9193516 67 - 12369635 --GGGCGGAUAUCCGCAAAUUUUUGUGAAAUAAAUAUGUUAAAAGUAUGUACAUGUUGU-UGAAAUAUCC --....((((((.(((((....))))).....(((((((...........)))))))..-....)))))) ( -11.20, z-score = -0.75, R) >droGri2.scaffold_14830 5459008 59 + 6267026 ---------AAGUCACAAA--UAAAAAAGUUGAGAAUUUGUAAAGUAUGUGUUUAUUGUGUGCAGAAAAC ---------..........--...............((((((.((((......))))...)))))).... ( -5.20, z-score = 0.52, R) >consensus GGGGGCGGAAAUCCGCAAA__UGUGCAAGUUAAAUA_UUGAAAAGUAUUUGUUGAUUGUACGCAGUAAAC ...(.(((....))))......((((((..((((((.((....))))))))....))))))......... ( -6.26 = -6.87 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:54 2011