| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,465,940 – 24,466,033 |
| Length | 93 |
| Max. P | 0.823574 |
| Location | 24,465,940 – 24,466,033 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 70.66 |
| Shannon entropy | 0.50250 |
| G+C content | 0.42129 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -9.84 |
| Energy contribution | -10.42 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24465940 93 - 27905053 GAAAAUAAAUUUCAUCGGC-----AGUAAGAAAAAAUAUGCACCAAUUACUACGCAUUUUCCAAGUGGAAAAUGUGCCUGAGUGCAGAGCCGCCCAGA---------------- ((((.....))))..((((-----.(((........)))((((((.......((((((((((....))))))))))..)).))))...))))......---------------- ( -22.50, z-score = -2.35, R) >droSim1.chr3R 24163468 93 - 27517382 GAAAAUAAAUUUCAUCGGC-----AGUCAGGAAAAAUAUGCACCAAUUACUACGCAUUUUCCAAGUGGAAAACGUGCCUGAGUGCAGAGCCGUCCAGA---------------- ((((.....)))).((.((-----(.(((((...(((........)))....(((.((((((....)))))).)))))))).))).))..........---------------- ( -21.40, z-score = -1.31, R) >droSec1.super_4 3348275 93 - 6179234 GAAAAUAAAUUUCAUCGGC-----AGUCAGGAAAAAUAUGCACCAAUUACCACGCAUUUUCCAAGUGGAAAAUGUGCCUGAGUGCAGAGCCGUCCAGA---------------- ((((.....)))).((.((-----(.(((((...(((........)))....((((((((((....))))))))))))))).))).))..........---------------- ( -25.70, z-score = -2.81, R) >droEre2.scaffold_4820 6901597 89 + 10470090 ----AUAAAUUGCAUCUGU-----AGUCAGGAAAAAUAUGCACCAAUUACUACGCAUUUUCCAAGUGGAAAAUGUGCCUGAGUGCAGAGCCGCCCAGA---------------- ----.......((.(((((-----(.(((((...(((........)))....((((((((((....))))))))))))))).))))))))........---------------- ( -29.60, z-score = -4.20, R) >droYak2.chr3R 6808665 78 + 28832112 ----AUAAAUUUCAUGUGU-----AGUCAGGAAAAAUAUGCACCAAUUACUACGCAUUUUCCAAGUGGAAAAUGUGCCUGAGC-CAGA-------------------------- ----..........((.((-----..(((((...(((........)))....((((((((((....)))))))))))))))))-))..-------------------------- ( -17.50, z-score = -1.61, R) >droPer1.super_7 789482 113 - 4445127 GAAAGGAAAUGUUGCCAAUGUCAGAGCCGGAAAAUGGAAGUACAAAUUACUGUGCA-UAUCCGAGUGUGAAAUAUUUUUAGGGCCAGGCUAGGGCUAGCCGCACAUCAAGUGCG ..........((((((...(((.(.(((.(((((((...(((((......)))))(-(((....))))....)))))))..)))).)))...))).)))(((((.....))))) ( -28.30, z-score = -0.14, R) >consensus GAAAAUAAAUUUCAUCGGC_____AGUCAGGAAAAAUAUGCACCAAUUACUACGCAUUUUCCAAGUGGAAAAUGUGCCUGAGUGCAGAGCCGCCCAGA________________ ..........................(((((.....................((((((((((....)))))))))))))))................................. ( -9.84 = -10.42 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:50 2011