| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,448,666 – 24,448,784 |
| Length | 118 |
| Max. P | 0.682881 |
| Location | 24,448,666 – 24,448,784 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 92.97 |
| Shannon entropy | 0.12596 |
| G+C content | 0.34915 |
| Mean single sequence MFE | -20.71 |
| Consensus MFE | -18.12 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24448666 118 - 27905053 UCAGGGCUGAUAAAUAUUUAAACAUCACUCAAGUACAGAAACCUCACGCUAUUGGCAAAUGACUUUAAACUAAUAGCAAACAGGAUAGAAAUUUUGCUGUCGGAAAAACAGCAUAAAA .....((((.................((....)).......((....((((((((..............))))))))......(((((........))))))).....))))...... ( -19.34, z-score = -0.99, R) >droSim1.chr3R 24140222 118 - 27517382 UCAGGGCUGAUAAAUAUUUAAACAUCACUCAAGUACAGAAGCCUCACGCUAUUGGCAAAUGACUUUAAACUAAUAGCAAACAGGAUAGACAUUUUGCUGUCGGAAAAACAGCACAAAA .....((((.....................((((.((...(((..........)))...))))))....(..((((((((..(......)..))))))))..).....))))...... ( -21.90, z-score = -1.37, R) >droSec1.super_22 1051007 118 - 1066717 UCAGGGCUGAUAAAUAUUUAAACAUCACUUAAGUACAGAAACCUCACGCUAUUGGCAAAUGACUUUAAACUAAUAGCAAACAGGAUAGACAUUUUGCUGUCGGAAAAACAGCACAAAA .....((((.....(((((((.......)))))))......((....((((((((..............))))))))......(((((.(.....)))))))).....))))...... ( -21.94, z-score = -1.98, R) >droYak2.chr3R 6787583 118 + 28832112 UCAGAGCUGCUAAAUAUUUAAACAUCACUCAAAAACGAAAACCUCACGCUAGUAGCAAAUGACUUUAAACUAAUAGCAAACCGGAUAGACAUUUUACUGUCGGAAAACCAGCACAAAA .....((((......................................((((.(((..............))).))))...(((.((((........))))))).....))))...... ( -16.24, z-score = -0.92, R) >droEre2.scaffold_4820 6885507 118 + 10470090 UCAGAGCUGAUAAAUAUUUAAACAUCACUCAAGUGCAGAAACCUCACGCUAUUGGCAAAUCACUUUAAACUAAUAGCAAAUAGGAUAGACAUUUUACUGUCGAAAAAGCAGCACAAAA ...(((.((((............)))))))..((((.....(((...((((((((..............))))))))....)))...((((......)))).........)))).... ( -24.14, z-score = -2.84, R) >consensus UCAGGGCUGAUAAAUAUUUAAACAUCACUCAAGUACAGAAACCUCACGCUAUUGGCAAAUGACUUUAAACUAAUAGCAAACAGGAUAGACAUUUUGCUGUCGGAAAAACAGCACAAAA .....((((......................................((((((((..............))))))))......(((((........))))).......))))...... (-18.12 = -18.16 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:50 2011