| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,917,581 – 8,917,635 |
| Length | 54 |
| Max. P | 0.990728 |
| Location | 8,917,581 – 8,917,635 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 93.70 |
| Shannon entropy | 0.11156 |
| G+C content | 0.44074 |
| Mean single sequence MFE | -13.08 |
| Consensus MFE | -12.76 |
| Energy contribution | -12.84 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.44 |
| SVM RNA-class probability | 0.990728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8917581 54 - 23011544 CCACGAACAGAACCACAAACUAAGAUCCAAGAUUCUAUUUCGAUUUGGUUCUGG .......((((((((.......(((........))).........)))))))). ( -11.49, z-score = -2.19, R) >droSim1.chr2L 8697060 54 - 22036055 CCACGAGCAGAACCACGAACUAAGAUCCAAGAUUCUAUUUCGAUUUGGUUCUCG ......(.(((((((((((.((..(((...)))..)).))))...)))))))). ( -13.10, z-score = -2.66, R) >droSec1.super_3 4391702 54 - 7220098 CCACGAGCAGAACCACGAACUAAGAUCCAAGAUUCUAUUUCGAUUUGGUUCUGG .......((((((((((((.((..(((...)))..)).))))...)))))))). ( -16.20, z-score = -3.57, R) >droYak2.chr2L 11566630 54 - 22324452 CCACGAGCAGAGCCACGAACUAAGAUUCAAGAUUCUAUUUCGAUUUGGUUCUGG .......((((((((((((...(((........)))..))))...)))))))). ( -14.90, z-score = -2.64, R) >droEre2.scaffold_4929 9514141 54 - 26641161 CCACGAGCACAGCCACGAACUAAGAUCCCAGAUUCUAUUUUGAUUUGGUUCUGG ............(((.((((((((....((((......)))).))))))))))) ( -9.70, z-score = -0.87, R) >consensus CCACGAGCAGAACCACGAACUAAGAUCCAAGAUUCUAUUUCGAUUUGGUUCUGG .......((((((((((((.((..(((...)))..)).))))...)))))))). (-12.76 = -12.84 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:18 2011