| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,415,758 – 24,415,855 |
| Length | 97 |
| Max. P | 0.543513 |
| Location | 24,415,758 – 24,415,855 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.57 |
| Shannon entropy | 0.53555 |
| G+C content | 0.42993 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -14.06 |
| Energy contribution | -14.05 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24415758 97 - 27905053 AGCAGUCUCGUUGUCGCCA----CUGGCA-UGCUACA------------------AUGUUCGCCGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAUGUAAUUAGCAGCCUGGUGCUAAGU ..........(((.(((((----..(((.-(((((..------------------(((((((..(((.(((((.....))))).)))..))))))).....))))))))))))).))).. ( -29.60, z-score = -1.27, R) >droSim1.chr3R 24107259 97 - 27517382 AGCAGUCUCGUUGUCGCCA----CUGCCA-UGCUACA------------------AUGUUCGCCGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAUGUAAUUAGCAGCCUGGUGCUAAGU .(((((..((....))..)----))))..-...((((------------------.((((((..(((.(((((.....))))).)))..)))))))))).((((((......)))))).. ( -27.00, z-score = -0.76, R) >droSec1.super_22 1018495 91 - 1066717 AGCAGUCUCGUUGUCGCCA-----------CGCUACA------------------AUGCUCGCCGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAUGUAAUUAGCAGCCUGGUGCUAAGU .(((...((((((((((..-----------.((....------------------..))..))...(((((((....)))))))))))))))...)))..((((((......)))))).. ( -23.90, z-score = -0.15, R) >droYak2.chr3R 6754136 97 + 28832112 AGCAGUCUCGUUGUCGCCA----CUGGCA-UGCUACA------------------AUGUUCGCCGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAUGUAAUUAGCAGCCUGGUGCUAAGU ..........(((.(((((----..(((.-(((((..------------------(((((((..(((.(((((.....))))).)))..))))))).....))))))))))))).))).. ( -29.60, z-score = -1.27, R) >droEre2.scaffold_4820 6852625 97 + 10470090 AGCAGUCUCGUUGUCGCCA----CUGGCA-UGCUACA------------------AUGUUCGCCGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAUGUAAUUAGCAGCCUGGUGCUAAGU ..........(((.(((((----..(((.-(((((..------------------(((((((..(((.(((((.....))))).)))..))))))).....))))))))))))).))).. ( -29.60, z-score = -1.27, R) >droAna3.scaffold_13340 17221192 109 - 23697760 AGUAGUCUUGUUGUCGCCA----CUGCCG-UACAACAAUAGCAACA------GCCAUGCCUUCUUCUGGAAAGUUAAUUUUUCUGGCAACGAAUAAAUAAUUAGCAGCCAUGUGCUAAGU .((.((.(((((((((...----....))-.)))))))..)).))(------((((((((.......))...(((((((.(((.(....)))).....)))))))...)))).))).... ( -21.70, z-score = 0.44, R) >dp4.chr2 15244261 120 + 30794189 CGCAGUCUCGUUGUCGCCAGAUACGGCUGCCACAACAAAAGUGCCACUAAAGUCCAGGCCCAUAGCUGGAAAGUUAAUUUUUCAGGCAACGAAUACUUAAUUAGCAGCCAUGUGCUAACU ...(((.(((((((((((......))).........((((((...(((....(((((........))))).)))..))))))..))))))))..)))...((((((......)))))).. ( -29.40, z-score = -0.40, R) >droPer1.super_0 4863905 120 - 11822988 CGCAGUCUCGUUGUCGCCAGAUACGGCUGCCACAACAAAAGUGCCACUAAAGUCCAGGCCCAUAGCUGGAAAGUUAAUUUUUCAGGCAACGAAUACUUAAUUAGCAGCCAUGUGCUAACU ...(((.(((((((((((......))).........((((((...(((....(((((........))))).)))..))))))..))))))))..)))...((((((......)))))).. ( -29.40, z-score = -0.40, R) >droWil1.scaffold_181089 9108256 101 - 12369635 GGUAGUCUUAUUGUCGUCGCACAUGUAUGUAUGUAC-------------------AUAUAUAUAGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAAAUAAUUAGCAGACAUGUGCUAAGU .......(((((.((((.((...(((((((((....-------------------))))))))).((((((((....)))))))))).))))...)))))((((((......)))))).. ( -25.50, z-score = -2.08, R) >droVir3.scaffold_12822 3897089 81 - 4096053 AGCACUCUUGUUGUCGCCA---------------------------------------UCCACAGUUUGAAAGUUAAUUUUUCAGGCAACGAAUAAAUAAUUAGCAGACAUGUGCUAAGU (((((...((((...((..---------------------------------------......(((((((((.....)))))))))....(((.....))).)).)))).))))).... ( -16.50, z-score = -1.06, R) >droMoj3.scaffold_6540 17179205 81 - 34148556 AGCACUCUUGUUGUCU---------------------------------------ACGCGCAUAGCUCGAAAGUUAAUUUUUCAGGCAACGAAUAAAUAAUUAGCAGGCAUGUGCUAAGU (((((..(((((((((---------------------------------------..((.....))..(((((.....))))))))))))))...........(....)..))))).... ( -19.40, z-score = -0.87, R) >droGri2.scaffold_14906 1460381 81 - 14172833 AGCACUCUUGUUGUCGCCA-----------UGC----------------------A------CAACUCGAAAGUUAAUUUUUCAGGCAACGAAUAAAUAAUUAGCAGACAUGUGCUAAGU (((((((..(((((.((..-----------.))----------------------)------))))..))..(((((((.(((.(....)))).....)))))))......))))).... ( -18.70, z-score = -1.48, R) >consensus AGCAGUCUCGUUGUCGCCA____CUG_C__UGCUACA__________________AUGUUCACAGCUGGAAAGUUAAUUUUUCAGGCAACGAAUAAAUAAUUAGCAGCCAUGUGCUAAGU .......((((((((.............................................((....))(((((.....))))).))))))))........((((((......)))))).. (-14.06 = -14.05 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:42 2011