| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,403,844 – 24,403,935 |
| Length | 91 |
| Max. P | 0.649533 |
| Location | 24,403,844 – 24,403,935 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 92.07 |
| Shannon entropy | 0.15651 |
| G+C content | 0.29325 |
| Mean single sequence MFE | -13.09 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.649533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24403844 91 + 27905053 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droSim1.chr3R 24095411 91 + 27517382 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droSec1.super_22 1006660 91 + 1066717 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droYak2.chr3R 6741000 91 - 28832112 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droEre2.scaffold_4820 6840664 91 - 10470090 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droAna3.scaffold_13340 17209749 91 + 23697760 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >dp4.chr2 15232159 91 - 30794189 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((....-........))))......................))))).. ( -13.00, z-score = -1.27, R) >droPer1.super_0 4851789 92 + 11822988 -------------------UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUUUAAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU -------------------(((((.(((((((.(((....))).)))))))..........((((..((.....))..))))......................))))).. ( -13.30, z-score = -1.33, R) >droWil1.scaffold_181089 9093330 110 + 12369635 UAUUCCGACCCCUCCUCUGUAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU ..............((.((((....(((((((.(((....))).)))))))..........((((....-........))))..........)))).))............ ( -15.00, z-score = -1.18, R) >droVir3.scaffold_12822 3882526 100 + 4096053 ----------UCAUUUUACCGUUACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU ----------..(((((........(((((((.(((....))).)))))))..........((((....-........)))).............)))))........... ( -12.60, z-score = -0.52, R) >droMoj3.scaffold_6540 17165522 100 + 34148556 ----------UCAUUUAACCGUUACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU ----------............((((((((((.(((....))).)))))))..........((((....-........))))................))).......... ( -12.60, z-score = -0.55, R) >droGri2.scaffold_14906 1447588 100 + 14172833 ----------UCAUUUUACCGUUACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU-AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU ----------..(((((........(((((((.(((....))).)))))))..........((((....-........)))).............)))))........... ( -12.60, z-score = -0.52, R) >consensus ___________________UAUAACCGGAAGCGUUCAUGAGAAAGUUUCCGCUUUCAUAACCGAAUUUU_AAUUAACUUUCGAAAACCUAAUUACAAAGUAUUAUUAUAAU .........................(((((((.(((....))).)))))))..........((((.............))))............................. (-12.32 = -12.32 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:40 2011