| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,398,985 – 24,399,102 |
| Length | 117 |
| Max. P | 0.959315 |
| Location | 24,398,985 – 24,399,102 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 97.01 |
| Shannon entropy | 0.05491 |
| G+C content | 0.47604 |
| Mean single sequence MFE | -37.74 |
| Consensus MFE | -35.26 |
| Energy contribution | -35.74 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24398985 117 - 27905053 UUUGUGCUCAGGAAGACCCUUGGAACCCGGGACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCUACAUUUUAUGCUCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...(((((((((......)))))......((.((.(((.(((((..(((.(((((..(((....)))..)))))...)))..)))))))).))))))))...(((((....))))). ( -37.40, z-score = -2.27, R) >droSim1.chr3R 24089943 117 - 27517382 UUUGUGCCCAGGAAGACCCUUGGACCCCGGGACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCUACAUUUUAUGCUCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...(((((((((......)))))......((.((.(((.(((((..(((.(((((..(((....)))..)))))...)))..)))))))).))))))))...(((((....))))). ( -39.80, z-score = -2.89, R) >droSec1.super_22 1001739 117 - 1066717 UUUGUGCCCAGGAAGACCCUUGGACCCCGGGACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCUACAUUUUAUGCUCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...(((((((((......)))))......((.((.(((.(((((..(((.(((((..(((....)))..)))))...)))..)))))))).))))))))...(((((....))))). ( -39.80, z-score = -2.89, R) >droYak2.chr3R 6735901 117 + 28832112 UUUGUGCCCAGGAAGACCCUUGGACGACGGGACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCCACAUUUUAUGCUCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...(((((((((......)))))......((.((.(((.(((((..(((.(((((..(((....)))..)))))...)))..)))))))).))))))))...(((((....))))). ( -39.10, z-score = -2.54, R) >droEre2.scaffold_4820 6835739 116 + 10470090 UUUGUGC-CAGGAAGACCCUUGGACCCCGGAACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCUGCAUUUUAUGCCCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...((.(-((((......)))))))..(((..((.(((..((((..(((.(((((..(((....)))..)))))...)))..)))).))).)))))......(((((....))))). ( -32.60, z-score = -0.84, R) >consensus UUUGUGCCCAGGAAGACCCUUGGACCCCGGGACUCGUGUAGCAUUUAAUUGAAAUGGGCGCGAGCGUUUGUUUCUACAUUUUAUGCUCACUAGCCGCAUUAAAGUGCUAAUGCACUG ...(((((((((......)))))......((.((.(((.(((((..(((.(((((..(((....)))..)))))...)))..)))))))).))))))))...(((((....))))). (-35.26 = -35.74 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:39 2011