Locus 11891

Sequence ID dm3.chr3R
Location 24,395,838 – 24,395,924
Length 86
Max. P 0.700381
window16344

overview

Window 4

Location 24,395,838 – 24,395,924
Length 86
Sequences 6
Columns 86
Reading direction reverse
Mean pairwise identity 76.36
Shannon entropy 0.46343
G+C content 0.57493
Mean single sequence MFE -27.90
Consensus MFE -15.92
Energy contribution -17.53
Covariance contribution 1.62
Combinations/Pair 1.29
Mean z-score -1.38
Structure conservation index 0.57
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.700381
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 24395838 86 - 27905053
CGGGAAUAGGUAGCUGGCAUCGAAGUGGGUACACAUCGUUGGUGGGGCUAUGUGCAUUGGGGUAGCUCUGGAGCCCUGGAACUGGA
(((...((((..(((..((.(((.(((....))).))).))..((((((((.(......).))))))))..)))))))...))).. ( -26.40, z-score =  -0.15, R)
>droSim1.chr3R 24086870 86 - 27517382
CGGGAAUAGGGAGCUGGCAUCGAAGUGGGUACACAUCGUUGGUGGGGCUAUGUGCAUUGGGGUAGCUCUGGAGCCCUGGAACUGGA
(((...(((((..((..((.(((.(((....))).))).))..((((((((.(......).))))))))))..)))))...))).. ( -30.20, z-score =  -1.55, R)
>droSec1.super_22 998677 86 - 1066717
CGGGAAUAGGGAGCUGGCAUCGAAGUGAGUACACAUCGUUGGUGGGGCUAUGUGCAUUGGGGUAGCUCUGGAGCCCUGGAACUGGA
(((...(((((..((..((.(((.(((....))).))).))..((((((((.(......).))))))))))..)))))...))).. ( -28.90, z-score =  -1.21, R)
>droYak2.chr3R 6732686 86 + 28832112
CGGGAAUAGGGAGCUGGAUUCGAAGUGGGUACACAUCGAUGGUGGGGCUAUGUGCACUGGGGGAGCUGUGGCACCCUGGAACUGGA
(((...(((((..((.(..((((.(((....))).))))...).))((((((.((.(.....).)))))))).)))))...))).. ( -27.10, z-score =  -0.93, R)
>droEre2.scaffold_4820 6832641 86 + 10470090
CGGGAGUAGGGAGCUGGAAUCGAAGUGGGUACACAUCGAUGGUGGGGCUAUGUGCAUUGGGGGAGCUGUGGAACCCUGGAACUGGA
(((..(((.(.((((...(((((.(((....))).))))).....)))).).))).((.((((..(....)..)))).)).))).. ( -25.50, z-score =  -1.29, R)
>droVir3.scaffold_12822 3847621 83 - 4096053
UGGGAAGGAACGACUGUGCCAGUCGGACGGACAGAUAACAGAGAGAGCCCCA---AAUGGGGGCGCACUCUUUGACUAUGACUGAG
..........((((((...))))))..(((.((.....(((((((.(((((.---....)))))...)))))))....)).))).. ( -29.30, z-score =  -3.15, R)
>consensus
CGGGAAUAGGGAGCUGGCAUCGAAGUGGGUACACAUCGUUGGUGGGGCUAUGUGCAUUGGGGGAGCUCUGGAGCCCUGGAACUGGA
(((...(((((.........(((.(((....))).)))....(((((((((.(......).)))))))))...)))))...))).. (-15.92 = -17.53 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:38 2011