| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,395,178 – 24,395,285 |
| Length | 107 |
| Max. P | 0.812306 |
| Location | 24,395,178 – 24,395,285 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.15 |
| Shannon entropy | 0.39260 |
| G+C content | 0.41919 |
| Mean single sequence MFE | -26.96 |
| Consensus MFE | -14.16 |
| Energy contribution | -14.52 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24395178 107 + 27905053 ---CAAAAACACAUCGAUUGGCAGUCGUGGGCGUCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUCCAUAAACAUUUUC-AAACAUGACGACAACAUCACC------ ---........((.((((.....))))))..(((((((.(---(.((.(((((((......((((....)))).......)))))))...))-.)))))))))...........------ ( -23.52, z-score = -0.94, R) >droSim1.chr3R 24086203 107 + 27517382 ---CAAAAACACAUCGAUUGGCAGUCGUGGGCGUCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUCCAUAAACAUUUUC-AAACAUGACGACAACAUCACC------ ---........((.((((.....))))))..(((((((.(---(.((.(((((((......((((....)))).......)))))))...))-.)))))))))...........------ ( -23.52, z-score = -0.94, R) >droSec1.super_22 998012 107 + 1066717 ---CAAAAACACAUCGAUUGGCAGUCGUGGGCGUCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUCCAUAAACAUUUUC-AAACAUGACGACAACAUCACC------ ---........((.((((.....))))))..(((((((.(---(.((.(((((((......((((....)))).......)))))))...))-.)))))))))...........------ ( -23.52, z-score = -0.94, R) >droYak2.chr3R 6732034 107 - 28832112 ---CAAAAACACAUCGAUUGGCAGUCGUGGGCGUUGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUCCAUAAACAUUUUC-AAACAUGACGACAACAUCACC------ ---............(((..(..(((((((((.....)))---..((.(((((((......((((....)))).......)))))))...))-...))))))..)...)))...------ ( -22.32, z-score = -0.43, R) >droEre2.scaffold_4820 6831995 113 - 10470090 ---CAAAAACACAUCGAUUGGCUGUCGUGGGCGUCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUCCAUAAACAUUUUC-AAACAUGACGACAACAUCACCGGCACC ---................((.((((((((.(((((((.(---(.((.(((((((......((((....)))).......)))))))...))-.)))))))))......))).))))))) ( -27.72, z-score = -1.27, R) >droAna3.scaffold_13340 17200367 110 + 23697760 ------AACCACUUCGAUUGGCAGUCGUGGGCGUCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGCUUCAUAAACAUUUUC-AAACAUGACGACAACAUCGGCAACUGC ------..............(((((.((.(((((((((.(---(.((.(((((((......((((....)))).......)))))))...))-.)))))))))......)).)).))))) ( -27.52, z-score = -1.37, R) >dp4.chr2 15222236 106 - 30794189 ---CAAAGAGCCUUCGAUUGGUAGUCGUAGGCGUCAUGUU---UCGAUUGUUUAUUAUCAUCACCUACAGGUGUCGCUCCAUAAACAUUUUCCGAACAUGACGACAAC--CAAU------ ---......((((.((((.....)))).))))((((((((---(.((.(((((((......((((....)))).......)))))))...)).)))))))))......--....------ ( -34.62, z-score = -4.75, R) >droPer1.super_0 4841875 106 + 11822988 ---CAAAGAGCCUUCGAUUGGUAGUCGUAGGCGUCAUGUU---UCGAUUGUUUAUUAUCAUCACCUACAGGUGUCGCUCCAUAAACAUUUUCCGAACAUGACGACAAC--CAAU------ ---......((((.((((.....)))).))))((((((((---(.((.(((((((......((((....)))).......)))))))...)).)))))))))......--....------ ( -34.62, z-score = -4.75, R) >droWil1.scaffold_181089 9083747 98 + 12369635 ---UCCACCUACUUCGAUUGUGAGUCGUAGUAGUCGUGCUCAGUCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGUUUAAUAAACAUUUUC--AACGUCGUC----------------- ---..((((((((.((((.....)))).)))))..)))....((.((.(((((((((....((((....)))).....)))))))))...))--.))......----------------- ( -24.90, z-score = -3.14, R) >droVir3.scaffold_12822 3846947 107 + 4096053 AAGUGGACCCACUUCGAUUGGCAGUCGUAG---UCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGCUUCAUAAACAUUUUC-AAACAAAACGACGAAGUCGAC------ .((((....))))((((((....(((((((---(((....---.)))))((((((......((((....)))).......))))))......-.......)))))..)))))).------ ( -28.22, z-score = -2.05, R) >droMoj3.scaffold_6540 17155096 106 + 34148556 AAGUGGACCCACUUCGAUUGGCAGUCGUAG---UCGUGCU---UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGCUUCAUAAACAUUUUC-AAACAAAACAACGACUUCGA------- (((((....)))))...((((.((((((.(---(..((.(---(.((.(((((((......((((....)))).......)))))))...))-.))))..)).))))))))))------- ( -25.92, z-score = -1.99, R) >droGri2.scaffold_14906 1438051 106 + 14172833 AAGUGGACUCAGUUCCAUUGGAAGUCGUAG---UCGUGCU---UCAAUUGUUUAUUAUUAUCACCUACAGGUGUCGCUUCAUAAACAUUUUC-AAACAAAACGACGACUGCGA------- .((((((......)))))).....((((((---((((...---.....(((((((......((((....)))).......)))))))((((.-....))))..))))))))))------- ( -27.12, z-score = -2.14, R) >consensus ___CAAAAACACUUCGAUUGGCAGUCGUAGGCGUCGUGCU___UCGAUUGUUUAUUAUUAUCACCUACAGGUGUCGCUCCAUAAACAUUUUC_AAACAUGACGACAACAUCAAC______ .......................(((((.....(((........))).(((((((......((((....)))).......))))))).............)))))............... (-14.16 = -14.52 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:37 2011