| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,913,835 – 8,913,935 |
| Length | 100 |
| Max. P | 0.842443 |
| Location | 8,913,835 – 8,913,935 |
|---|---|
| Length | 100 |
| Sequences | 11 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.14 |
| Shannon entropy | 0.51153 |
| G+C content | 0.33610 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.59 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842443 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 8913835 100 + 23011544 CAGUGCCCAGUUCCAUGUCGUUAAAUUUAUGCCAUAGCUUAAUUACACUAAAUUACGCAUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCACACA ..((((((((((...(((.(((((............((.(((((......))))).)).(((.......))).))))))))...)))).))))))..... ( -21.30, z-score = -3.44, R) >droSim1.chr2L 8693311 100 + 22036055 CAGUGCCCAGUUCCAUGUCAUUAAAUUUAUGCCAUAGCUUAAUUACACUAAAUUACGCAUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCACACA ..((((((((((..(((.(((.......))).))).((.(((((......))))).)).((((((.....))))))........)))).))))))..... ( -19.90, z-score = -3.33, R) >droSec1.super_3 4388022 99 + 7220098 CAGUGCCCAGUGC-AUGUCAUUAAAUUUAUGCCAUAGCUUAAUUACACUAAAUUACGCAUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCACACA ..(((((((((((-(((..........)))))....((.(((((......))))).)).((((((.....)))))).........))).))))))..... ( -21.20, z-score = -2.85, R) >droYak2.chr2L 11562692 100 + 22324452 CAGCGCCCAGUUCCAUGUCAUUAAAUUUAUGCCAUCGCUUAAUUACACUAAAUUACGCCUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCAUACA ..((((((((((...(((.((((((((((.......((.(((((......))))).)).....)))).))))))....)))...)))).))))))..... ( -20.80, z-score = -3.85, R) >droEre2.scaffold_4929 9510328 100 + 26641161 CAGUGCCCAGUUUCAUGUCAUUAAAUUUAUGCCAACGCUUAAUUACACUAAAUUACGCCUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCACACA ..((((((((((...(((.((((((((((.......((.(((((......))))).)).....)))).))))))....)))...)))).))))))..... ( -18.90, z-score = -2.99, R) >droAna3.scaffold_12916 10578876 96 + 16180835 UGGCGCCCAGUUCCAUGUCAUUAAAUUUAUGCCAGAGCUUAAUUACUCUAAAUUACGCUUAAUUAAAUUUUAAUUAACACAAUCAACUAGCGCACA---- ..((((..((((...(((.((((((((((.....((((.(((((......))))).))))...)))).))))))....)))...)))).))))...---- ( -16.30, z-score = -1.91, R) >dp4.chr4_group5 1844141 97 - 2436548 ---UGCUCCCCAGCGUAACAUUAAAUUUAUGCCAACGCUUAAUUAUACAAAAUUACGCUUAAUUAAAUUUUAAUUAACACAAUCAACUAGCGUACACACA ---.........((((((........))))))..((((((((((......))))).(.(((((((.....))))))))..........)))))....... ( -10.80, z-score = -1.33, R) >droPer1.super_5 1717222 97 - 6813705 ---UGCUCCCCAGCGUAACAUUAAAUUUAUGCCAACGCUUAAUUAUACAAAAUUACGCUUAAUUAAAUUUUAAUUAACACAAUCAACUAGCGUACACACA ---.........((((((........))))))..((((((((((......))))).(.(((((((.....))))))))..........)))))....... ( -10.80, z-score = -1.33, R) >droWil1.scaffold_180772 255105 94 + 8906247 -----UGGCAUGUAGAAGCAUUUA-UUUAUGCCAGAGCCUAAUUAUACUAAAUUACGCUUAAUUAAAAUUUAAUUAACACAAUCAAGUAGCUCACACACA -----(((((((((((....))))-)..))))))((((.......((((..(((..(.(((((((.....))))))))..)))..))))))))....... ( -14.91, z-score = -1.09, R) >droVir3.scaffold_12723 4952117 88 + 5802038 -----UGGUGCACAGCA---UUCAGCGU-UGA---AGUCUAAUUAUACAUAAUUACGCAUAAUUAAAAUUUAAUUAACACAAUCAAGAGCUGCUCGCACU -----.(((((..((((---(((...((-((.---.((.((((((....)))))).)).((((((.....))))))...))))...))).)))).))))) ( -17.10, z-score = -1.52, R) >droMoj3.scaffold_6500 10952420 92 + 32352404 -----CGGUGCACAGCAGCAUGCGGCGUAUGC---GAUCUAAUUAUACAUAAUUGCGCGUAAUUAAAAUUUAAUUAACACAAUCAAGAGCUGCUCGCACU -----.(((((..(((((((((((((....))---....((((((....)))))))))))(((((.....))))).............)))))).))))) ( -22.90, z-score = -0.74, R) >consensus __GUGCCCAGUUCCAUGUCAUUAAAUUUAUGCCAUAGCUUAAUUACACUAAAUUACGCAUAAUUAAAUUUUAAUUAACACAAUCAACUAGGGCGCACACA ....((((............................((.(((((......))))).)).((((((.....)))))).............))))....... ( -6.70 = -6.59 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:17 2011