| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,392,968 – 24,393,063 |
| Length | 95 |
| Max. P | 0.733058 |
| Location | 24,392,968 – 24,393,063 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 71.22 |
| Shannon entropy | 0.57442 |
| G+C content | 0.46387 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -9.55 |
| Energy contribution | -9.65 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24392968 95 - 27905053 UGUGAGUG-CUGGCUAUGUGUUG--GCGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUACG-CCACUCCGGCCC------------ ((((((((-(..((.....))..--))..((((((((.(.....).))))))))...))))))).((((.....)))).......(-((.....)))..------------ ( -26.90, z-score = -1.54, R) >droSim1.chr3R 24084000 95 - 27517382 UGUGAGUG-GUGGCUAUGUGUUG--GCGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUACG-CCACUCCGGCCC------------ .(.(((((-(((((((.((((..--....((((((((.(.....).)))))))).......))))))))....((......)).))-))))))).....------------ ( -29.62, z-score = -2.15, R) >droSec1.super_22 995826 95 - 1066717 UUGCAAUG-GUGGCUAUGUGUUG--GCGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUACG-CCACUCCGACCC------------ .......(-(((((...((..((--((..((((((((.(.....).))))))))((.....))...........))))..))...)-))))).......------------ ( -24.90, z-score = -1.56, R) >droEre2.scaffold_4820 6829836 104 + 10470090 ----AGUG-GUGGCGAUGUGUUG--GCGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUACGACUACGCUACACCGCCCCUCCGCCC ----.(((-(.((((..((((.(--(((.((((((((.(.....).))))))))((..(......((((.....)))).....)..))..))))))))))))...)))).. ( -32.50, z-score = -2.69, R) >droAna3.scaffold_13340 17198300 96 - 23697760 UUUGUGUGUAUGCCGAUGUGUUG--GUGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUCCGCCACCGACGCCC------------- .(((.((....))))).((((((--(((.((((((((.(.....).))))))))...........((((.....)))).........)))))))))..------------- ( -25.40, z-score = -2.01, R) >droPer1.super_0 4837496 94 - 11822988 UGUGAGUG-AUGCCUAUGUAUUG--GUGGGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACU-CCACCAGGCCUCAC------------- .....(((-(.((((.......(--((((((((((((.(.....).))))))))...........((((.....)))).....-))))))))).))))------------- ( -28.31, z-score = -2.29, R) >dp4.chr2 15217996 94 + 30794189 UGUGAGUG-GUGUCUAUGUAUUG--GUGGGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACU-CCACCAGGCCUCAC------------- .(((((..-..((((.......(--((((((((((((.(.....).))))))))...........((((.....)))).....-))))))))))))))------------- ( -25.01, z-score = -0.65, R) >droWil1.scaffold_181089 9080598 94 - 12369635 --CAACAAACUGUCUAUCUCUCGAUGUGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCCAGGGACUCCCCGCGCCCGC--------------- --.....(((((((((((....)))).))((((((((.(.....).))))))))...........)))))....((..(((....)))..))....--------------- ( -19.50, z-score = -0.37, R) >droMoj3.scaffold_6540 17152472 84 - 34148556 --------------CGACUGUGACUGUGUGUCCUUAUGACAAUUUGAUGAGGACCUUAUUUACACUAGUUAAAAGCUCCGCCCCGCCGCCAAGCUCCC------------- --------------.(((((((...(((.((((((((.(.....).))))))))..)))...))).))))...((((..((......))..))))...------------- ( -20.00, z-score = -2.55, R) >droGri2.scaffold_14906 1435390 81 - 14172833 --------------CGAAUGUGAAUGUGUCUCCUUAUGACAAUUUGAUGAGGACCUUAUUUACACUAGUUAAAAGCACAGCCCCCGCACCUGCCC---------------- --------------....((((((((....(((((((.(.....).)))))))...))))))))..........(((..((....))...)))..---------------- ( -14.90, z-score = -1.30, R) >droVir3.scaffold_12822 3844178 85 - 4096053 ------------UUCGUGUGUGACUGUGUGUCCUUAUGACAAUUUGAUGAGGACCUUAUUUACACUAGUUAAAAGCUCGGCCGCUGCUCUCUCCCUU-------------- ------------.(((.((.(((((((((((((((((.(.....).)))))))).......)))).)))))...)).))).................-------------- ( -19.71, z-score = -1.55, R) >consensus U_UGAGUG_GUGGCUAUGUGUUG__GUGAGUCCUUAUGACAAUUUGAUGAGGACGUUAUUUACACUAGUUAAAAGCUACGACUACGCCCACGCCGCCC_____________ .............................((((((((.(.....).))))))))......................................................... ( -9.55 = -9.65 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:36 2011