| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,380,772 – 24,380,873 |
| Length | 101 |
| Max. P | 0.991731 |
| Location | 24,380,772 – 24,380,873 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 89.71 |
| Shannon entropy | 0.17560 |
| G+C content | 0.58240 |
| Mean single sequence MFE | -35.34 |
| Consensus MFE | -32.02 |
| Energy contribution | -32.38 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24380772 101 - 27905053 ----------UACUCCUGCUCCUGAUCCAGAUCCUGCCGACGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACGGCCUCUCUGGCUGCUUGUCGUCUUAGGGCUGCCU ----------.................(((.(((((..(((((((...((((((........)))))).......(((((.....)))))..))))))).))))))))... ( -34.30, z-score = -2.49, R) >droSim1.chr3R 24071930 101 - 27517382 ----------UACUCCUGCUCCUGAUCCAGAUCCUGCCGACGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACGGCCUCUCUGGCCGCUUGUCGUCUUAGGGCUGCCU ----------.................(((.(((((..(((((((...((((((........)))))).......(((((.....)))))..))))))).))))))))... ( -36.50, z-score = -3.13, R) >droSec1.super_22 983757 101 - 1066717 ----------UACUCCUGCUCCUGAUCCAGAUCCUGCCGACGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACGGCCUCUCUGGCCGCUUGUCGUCUUAGGGCUGCCU ----------.................(((.(((((..(((((((...((((((........)))))).......(((((.....)))))..))))))).))))))))... ( -36.50, z-score = -3.13, R) >droEre2.scaffold_4820 6817218 101 + 10470090 ----------UACUCCUGCUCCUGAUUCAGAUCCUGCCGACGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACGGCCUCUCUGGCCGCUUGUCGUCUUAGGGCUGCCU ----------.................(((.(((((..(((((((...((((((........)))))).......(((((.....)))))..))))))).))))))))... ( -36.30, z-score = -3.14, R) >droAna3.scaffold_13340 17185531 108 - 23697760 CUCCACCGUCAGGUACUGUUCCUUUUCCAGAAUCUG---GCGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACUGCCUCUCUGGCCGCUUGUCGUCUUAGGGAUGCCU ......((((((((.(((.........))).)))))---))).(((((((((((.....))))).((((..((....(((.....))).))..)).))....))))))... ( -33.10, z-score = -1.48, R) >consensus __________UACUCCUGCUCCUGAUCCAGAUCCUGCCGACGACAUCCUGCGGCUAUUUGCUGCUGCACUUGUCACGGCCUCUCUGGCCGCUUGUCGUCUUAGGGCUGCCU ...........................(((.(((((..(((((((...((((((........)))))).......(((((.....)))))..))))))).))))))))... (-32.02 = -32.38 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:35 2011