| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,377,328 – 24,377,431 |
| Length | 103 |
| Max. P | 0.522556 |
| Location | 24,377,328 – 24,377,431 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.85 |
| Shannon entropy | 0.06897 |
| G+C content | 0.42849 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.68 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24377328 103 + 27905053 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droSim1.chr3R 24068503 103 + 27517382 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droSec1.super_22 980321 103 + 1066717 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droYak2.chr3R 6713537 103 - 28832112 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droEre2.scaffold_4820 6813751 103 - 10470090 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droAna3.scaffold_13340 17182030 103 + 23697760 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >dp4.chr2 15200763 103 - 30794189 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droPer1.super_0 4820194 103 + 11822988 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droWil1.scaffold_181089 9059486 100 + 12369635 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCA--- -----------------.........((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....--- ( -21.40, z-score = -0.82, R) >droVir3.scaffold_12822 3825375 103 + 4096053 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >droMoj3.scaffold_6540 17134481 120 + 34148556 CACCAGCACCAACACCAACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG ..(((((((...........((.......)).(((((....))))))))).............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.80, z-score = -0.48, R) >droGri2.scaffold_14906 1418574 103 + 14172833 -----------------ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG -----------------...(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) ( -23.30, z-score = -0.98, R) >consensus _________________ACACCAACAACAGGAAGGAAUGAUUUCUUGUGCCAAUAUUUUUCCAGAGCACACAAUUUCGAUUUGUCGAGUGCAACUUUGGCGCUCAUCGUACUCAUCAUGG ....................(((...((((((((......))))))))...............(((.((((((.......)))).((((((.......))))))...)).)))....))) (-22.42 = -22.68 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:34 2011