| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,374,858 – 24,374,976 |
| Length | 118 |
| Max. P | 0.962773 |
| Location | 24,374,858 – 24,374,976 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 63.02 |
| Shannon entropy | 0.68473 |
| G+C content | 0.37169 |
| Mean single sequence MFE | -26.96 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24374858 118 - 27905053 GGAUGUCAUAAUUGCUUUGACACGACUAUCAGAUACCUGGUAGUUGGCGAUUUCUUAGGAAAAAACAUUUAAAGCACUGAAGCUUUAGGUAUGCAGUUGAAAAACUUGUUUCUACCUA ((...(((....((((((((..((((((((((....))))))))))....((((....))))......)))))))).)))..)).((((((.((((((....))).)))...)))))) ( -31.90, z-score = -2.75, R) >droSim1.chr3R 24065950 117 - 27517382 GGAAGUCAUAAUUGGGUGGACACGACUAUCAGAUACCUGGUAGUUGUUCAUUUCUUUAGAAACAACAUUUAAAACA-UGAUGCUUUAAGUAUGCCGUUUAAAAACUAGUUUCUACAAU (((((((((......)))((.(((((((((((....))))))))))))))))))).(((((((....(((.((((.-..((((.....))))...)))).)))....))))))).... ( -26.20, z-score = -1.77, R) >droSec1.super_22 977835 91 - 1066717 GGAUGUCAUAAUUGGGUGGACACAACUAUCAGAUACCUGGUAGUUGUUCAUUUCUUAAGAAA---------------------------UAUGCCGUUAAAAAACUAGUUUCUACAAU ...(((...((((((...((((((((((((((....)))))))))))..(((((....))))---------------------------).....)))......))))))...))).. ( -22.30, z-score = -2.30, R) >droYak2.chr3R 6710926 111 + 28832112 GGAUGUCAUAAACGAGUGGAGACGACUGUCAGAUACCUGGUAGUUGGUGGUGUCUCAAGAAACAACAUUUCUACUG-CAUGCAACUACUUAGU--UUUCAGUAAACAGUUGAAG---- ..............(((((((((((((..(((....)))..)))))((.((.((....)).)).)).)))))))).-....(((((.....((--((.....)))))))))...---- ( -24.20, z-score = 0.71, R) >droEre2.scaffold_4820 6811288 106 + 10470090 -----UCAUAGUCGAGUGAACACGACUGCAAGAUACCUGGUAGUU-GUGAUUUAUCGAGA--CAACAUUUGUACUG-CAAGGAACUACUUAGCAGGUUACUUAACUAGUUGCAGU--- -----...((((..(((((.(((((((((.((....)).))))))-)))...........--...........(((-((((......))).)))).)))))..))))........--- ( -30.20, z-score = -1.89, R) >consensus GGAUGUCAUAAUUGAGUGGACACGACUAUCAGAUACCUGGUAGUUGGUGAUUUCUUAAGAAACAACAUUUAAACCA_CAAGGAACUACGUAUGCCGUUAAAAAACUAGUUUCUAC___ ...........(((((......((((((((((....)))))))))).......)))))............................................................ (-11.54 = -11.90 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:51:33 2011